RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RIPK2O43353 540 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 MYH3P11055 1940 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 CREB1P16220 341 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 PECAM1P16284 738 aaPredicted RBP13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 LMNB1P20700 586 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 PAPOLAP51003 745 aaKnown RBP13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 ECM1Q16610 540 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 MAPKAPK5Q8IW41 473 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 SEC14L1Q92503 715 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 NUDCD1Q96RS6 583 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 EPB41L4BQ9H329 900 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 ASIC3Q9UHC3 531 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 MTUS1Q9ULD2 1270 aa13.84□□□□□ -0.19
SFSWAP-209ENST00000540469 RPTORQ8N122 1335 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 FOXO6A8MYZ6 492 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 ALADP13716 330 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 PDIA5Q14554 519 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 SBK1Q52WX2 424 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 FAM182BQ5T319 152 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 BICDL1Q6ZP65 573 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 TEKT4Q8WW24 435 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 RMDN2Q96LZ7 410 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 MTMR9Q96QG7 549 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 PITPNM3Q9BZ71 974 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 SRCAPQ6ZRS2 3230 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 DPPA5A6NC42 116 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 PODXLO00592 558 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 PHF2O75151 1096 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 LINGO3P0C6S8 592 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 HIBADHP31937 336 aaKnown RBP13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 CHRNA3P32297 505 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 IL6STP40189 918 aaPredicted RBP13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 KCNJ1P48048 391 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 POLE2P56282 527 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 C12orf60Q5U649 245 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 ARHGEF3Q9NR81 526 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 STXBP5LQ9Y2K9 1186 aa13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 DIS3Q9Y2L1 958 aaKnown RBP13.83□□□□□ -0.2
SFSWAP-209ENST00000540469 PASKQ96RG2 1323 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 A0A0A6YYK5 440 aaPredicted RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 CALUO43852 315 aaPredicted RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 ABL2P42684 1182 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 RNASELQ05823 741 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 MESDQ14696 234 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 ZDHHC24Q6UX98 284 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 SLFN11Q7Z7L1 901 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 SRRM1Q8IYB3 904 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 TEX9Q8N6V9 391 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 ERP27Q96DN0 273 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 TMEM237Q96Q45 408 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 EYA3Q99504 573 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 SPZ1Q9BXG8 430 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 ZNF287Q9HBT7 754 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 CNOT7Q9UIV1 285 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 ZNF804BA4D1E1 1349 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 KDM3AQ9Y4C1 1321 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 KLHL33A6NCF5 533 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 RPL13P26373 211 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 TARSP26639 723 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 VPS41P49754 854 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 POU5F1Q01860 360 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 TMEM154Q6P9G4 183 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 BTNL9Q6UXG8 535 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 PPP4R3CPQ6ZMV5 832 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 LONP2Q86WA8 852 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 TXLNGYQ9BZA5 131 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 GPCPD1Q9NPB8 672 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 SYNGAP1Q96PV0 1343 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 O00370 1275 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 LIN7AO14910 233 aaPredicted RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 LRRN2O75325 713 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 KLRK1P26718 216 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 HOXA7P31268 230 aaPredicted RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 DCAF12L1Q5VU92 463 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 LBHD1Q9BQE6 289 aaPredicted RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 MOV10L1Q9BXT6 1211 aaKnown RBP13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 CTNNAL1Q9UBT7 734 aa13.82□□□□□ -0.2
SFSWAP-209ENST00000540469 BCORQ6W2J9 1755 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 SPOPO43791 374 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 GCNT3O95395 438 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 GH1P01241 217 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 SSR1P43307 286 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 EIF6P56537 245 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 PABPC4Q13310 644 aaKnown RBP eCLIP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 TNIP1Q15025 636 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 CLUL1Q15846 466 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 TMEM119Q4V9L6 283 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 ALG3Q92685 438 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 TRIM4Q9C037 500 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 THAP2Q9H0W7 228 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 VCXQ9H320 206 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 CCDC134Q9H6E4 229 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 THAP12O43422 761 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 AHCYL1O43865 530 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 RARGP13631 454 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 PRKCIP41743 596 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 NPEPPSP55786 919 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 MRPS35P82673 323 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 ORC2Q13416 577 aaPredicted RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 PLS1Q14651 629 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms