RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 USP40Q9NVE5 1235 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 TCP10L2B9ZVM9 353 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 P4HA2O15460 535 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 RNASE9P60153 205 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 EPHA10Q5JZY3 1008 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 SPDYCQ5MJ68 293 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 RSBN1LQ6PCB5 846 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 NDUFA13Q9P0J0 144 aa11.7□□□□□ -0.54
CLSTN3-207ENST00000537408 TSPY2A6NKD2 308 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 SMIM23A6NLE4 172 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ASLP04424 464 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 SSRP1Q08945 709 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 MKRN3Q13064 507 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 UAP1Q16222 522 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 CCNJLQ8IV13 435 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ATXN2LQ8WWM7 1075 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 NCSTNQ92542 709 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PLA2G12BQ9BX93 195 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ZMYND8Q9ULU4 1186 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 IPO5O00410 1097 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 BUB1O43683 1085 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 COBLO75128 1261 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 CIAO1O76071 339 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 MTIF2P46199 727 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 MTTPP55157 894 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PDE1BQ01064 536 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PTPN12Q05209 780 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PDIA6Q15084 440 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ASRGL1Q7L266 308 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 GPR101Q96P66 508 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 TLR10Q9BXR5 811 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ANGEL1Q9UNK9 670 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 TRIM43BA6NCK2 446 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 HGSO14964 777 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 CCNB1P14635 433 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 MMP13P45452 471 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 OXCT1P55809 520 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ERVK-9P63128 1117 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 CXCL9Q07325 125 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 LIN52Q52LA3 116 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 SPIRE2Q8WWL2 714 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 CSRNP2Q9H175 543 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF609O15014 1411 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PASKQ96RG2 1323 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PHEXP78562 749 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 SPATA24Q86W54 205 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 MICU3Q86XE3 530 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 NEK9Q8TD19 979 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 PNMA3Q9UL41 463 aa11.69□□□□□ -0.54
CLSTN3-207ENST00000537408 BMP15O95972 392 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 SHBGP04278 402 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 UBTFL6P0CB48 400 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 OCRLQ01968 901 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 DPYDQ12882 1025 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 MYBPC2Q14324 1141 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 PLS1Q14651 629 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 APPBP2Q92624 585 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 PGM2Q96G03 612 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 AS3MTQ9HBK9 375 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 FGFR1OP2Q9NVK5 253 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 DBNLQ9UJU6 430 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 TRIM33Q9UPN9 1127 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 GOLGA8AA7E2F4 631 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 DCDC2CA8MYV0 355 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 BIRC5O15392 142 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 PRPF3O43395 683 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 KRT38O76015 456 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 HARSP12081 509 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF157P51786 506 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 SNX30Q5VWJ9 437 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 USP38Q8NB14 1042 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 SCG3Q8WXD2 468 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 INPP5DQ92835 1189 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 FAM136AQ96C01 138 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 LRMDAQ9H2I8 198 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 NMRK2Q9NPI5 230 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 DDX25Q9UHL0 483 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 PDS5AQ29RF7 1337 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 TCP11X1B4DZS4 312 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 PSMA7O14818 248 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 OPHN1O60890 802 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 ATP5DP30049 168 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 APLP1P51693 650 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 TCP10Q12799 353 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 FOXB2Q5VYV0 432 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 MAP1SQ66K74 1059 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 PDCD7Q8N8D1 485 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 SPATA5Q8NB90 893 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 ARHGEF2Q92974 986 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 SLC35B4Q969S0 331 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 GRAMD1AQ96CP6 724 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 DYDC2Q96IM9 177 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 EIF2AQ9BY44 585 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 AZI2Q9H6S1 392 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 GGA3Q9NZ52 723 aa11.68□□□□□ -0.54
CLSTN3-207ENST00000537408 LSM1O15116 133 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 GNA14O95837 355 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 EIF4A3P38919 411 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 RPS6KA1Q15418 735 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF658Q5TYW1 1059 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms