RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RBM26Q5T8P6 1007 aaKnown RBP20.89■□□□□ 0.94
VPS28-213ENST00000530983 FBXW10Q5XX13 1052 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 SPATS2Q86XZ4 545 aaKnown RBP20.89■□□□□ 0.94
VPS28-213ENST00000530983 PALB2Q86YC2 1186 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 FAM178BQ8IXR5 827 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 CTNNBL1Q8WYA6 563 aaPredicted RBP20.89■□□□□ 0.94
VPS28-213ENST00000530983 ARHGEF26Q96DR7 871 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 TAS2R14Q9NYV8 317 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 SEL1LQ9UBV2 794 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 APEX2Q9UBZ4 518 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 SLC12A6Q9UHW9 1150 aa20.89■□□□□ 0.94
VPS28-213ENST00000530983 SRRM3A6NNA2 597 aaPredicted RBP20.89■□□□□ 0.93
VPS28-213ENST00000530983 PRELPP51888 382 aa20.89■□□□□ 0.93
VPS28-213ENST00000530983 FKBP1AP62942 108 aaKnown RBP20.89■□□□□ 0.93
VPS28-213ENST00000530983 MTMR3Q13615 1198 aa20.89■□□□□ 0.93
VPS28-213ENST00000530983 HS2ST1Q7LGA3 356 aa20.89■□□□□ 0.93
VPS28-213ENST00000530983 NLGN1Q8N2Q7 840 aa20.89■□□□□ 0.93
VPS28-213ENST00000530983 CEP89Q96ST8 783 aa20.89■□□□□ 0.93
VPS28-213ENST00000530983 FRMD4BQ9Y2L6 1034 aa20.89■□□□□ 0.93
VPS28-213ENST00000530983 FAM170AA1A519 330 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 MEFVO15553 781 aaPredicted RBP20.88■□□□□ 0.93
VPS28-213ENST00000530983 HNRNPH1P31943 449 aaKnown RBP20.88■□□□□ 0.93
VPS28-213ENST00000530983 STAT2P52630 851 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 UBXN2AP68543 259 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 BIRC3Q13489 604 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 PLS1Q14651 629 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 PPP2R5AQ15172 486 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 KIAA1755Q5JYT7 1200 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 KCNV1Q6PIU1 500 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 ARFGAP2Q8N6H7 521 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 MASTLQ96GX5 879 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 TRIM51Q9BSJ1 452 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 THAP2Q9H0W7 228 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 DPH5Q9H2P9 285 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 TDRD3Q9H7E2 651 aaKnown RBP20.88■□□□□ 0.93
VPS28-213ENST00000530983 SERPINA10Q9UK55 444 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 UTP11Q9Y3A2 253 aaKnown RBP20.88■□□□□ 0.93
VPS28-213ENST00000530983 FAM107AO95990 144 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 ECE1P42892 770 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 ODR4Q5SWX8 454 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 RUFY4Q6ZNE9 571 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 FAM114A2Q9NRY5 505 aa20.88■□□□□ 0.93
VPS28-213ENST00000530983 ECE2O60344 883 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 GAS7O60861 476 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 PTENP60484 403 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 MYL7Q01449 175 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 PHLDB3Q6NSJ2 640 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 BANK1Q8NDB2 785 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 ATP8B4Q8TF62 1192 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 COG5Q9UP83 839 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 E7EVH7 732 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 PDE6BP35913 854 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 DHX9Q08211 1270 aaKnown RBP20.87■□□□□ 0.93
VPS28-213ENST00000530983 ARHGAP44Q17R89 818 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 NACC1Q96RE7 527 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 CARD9Q9H257 536 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 ODF2LQ9ULJ1 636 aa20.87■□□□□ 0.93
VPS28-213ENST00000530983 DIS3Q9Y2L1 958 aaKnown RBP20.87■□□□□ 0.93
VPS28-213ENST00000530983 TRIM37O94972 964 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 BFSP1Q12934 665 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 STXBP4Q6ZWJ1 553 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 LMO3Q8TAP4 145 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 STRA6Q9BX79 667 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 UNC45AQ9H3U1 944 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 LRRC4CQ9HCJ2 640 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 KCND2Q9NZV8 630 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 LOXHD1Q8IVV2 1947 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 KIAA0754O94854 1291 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 MUTP22033 750 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 PPARDQ03181 441 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 PRPF4BQ13523 1007 aaKnown RBP20.86■□□□□ 0.93
VPS28-213ENST00000530983 KIF22Q14807 665 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 AGBL2Q5U5Z8 902 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 YTHDF3Q7Z739 585 aaKnown RBP20.86■□□□□ 0.93
VPS28-213ENST00000530983 CSRNP1Q96S65 589 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 TRIM31Q9BZY9 425 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 ERVK-5Q9HDB9 667 aa20.86■□□□□ 0.93
VPS28-213ENST00000530983 PPANQ9NQ55 473 aaKnown RBP20.86■□□□□ 0.93
VPS28-213ENST00000530983 ANKRD62A6NC57 917 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 FOXN3O00409 490 aaPredicted RBP20.85■□□□□ 0.93
VPS28-213ENST00000530983 CCDC172P0C7W6 258 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 POLR2MP0CAP2 368 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 TNFAIP3P21580 790 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 COPB2P35606 906 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 CEP55Q53EZ4 464 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 CCDC174Q6PII3 467 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 ADAT2Q7Z6V5 191 aaKnown RBP20.85■□□□□ 0.93
VPS28-213ENST00000530983 OTUD6BQ8N6M0 293 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 ALG3Q92685 438 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 TXLNGYQ9BZA5 131 aa20.85■□□□□ 0.93
VPS28-213ENST00000530983 SEPT11Q9NVA2 429 aaKnown RBP20.85■□□□□ 0.93
VPS28-213ENST00000530983 BCCIPQ9P287 314 aaKnown RBP eCLIP20.85■□□□□ 0.93
VPS28-213ENST00000530983 DCDC2CA8MYV0 355 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 EXOC3O60645 756 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 LRRN2O75325 713 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 ENTPD3O75355 529 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 ARP10275 920 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 MAPK7Q13164 816 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 MICALCLQ6ZW33 695 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 KRT27Q7Z3Y8 459 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms