RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 PPP1R18Q6NYC8 613 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 NIPA1Q7RTP0 329 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 MIER3Q7Z3K6 550 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 FRMD5Q7Z6J6 570 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 ZNF280BQ86YH2 543 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 REXO1Q8N1G1 1221 aaKnown RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 LRRC43Q8N309 656 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 BCL7CQ8WUZ0 217 aaPredicted RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 BRF1Q92994 677 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 TMEM169Q96HH4 297 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 PRRX2Q99811 253 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 SLC26A6Q9BXS9 759 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 GCOM2Q9BZD3 368 aaPredicted RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 UNC45AQ9H3U1 944 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 NRDE2Q9H7Z3 1164 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 NCOA5Q9HCD5 579 aaKnown RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 BMP2KQ9NSY1 1161 aaPredicted RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 VPS54Q9P1Q0 977 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 DNAJB4Q9UDY4 337 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 SEPT9Q9UHD8 586 aaPredicted RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 SORCS3Q9UPU3 1222 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 LZTS1Q9Y250 596 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 NR2E1Q9Y466 385 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 EVPLQ92817 2033 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 ZFHX2Q9C0A1 2572 aaPredicted RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 WDR64B1ANS9 1081 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 PRPF3O43395 683 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 GALR2O43603 387 aaPredicted RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 B4GALT3O60512 393 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 GAS7O60861 476 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 GALTP07902 379 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 SPATA31D3P0C874 917 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 KLRC2P26717 231 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 PPM1AP35813 382 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 MTHFRP42898 656 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 SLC11A1P49279 550 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 AFF1P51825 1210 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 MTMR3Q13615 1198 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 BMS1Q14692 1282 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 LRCH2Q5VUJ6 765 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 SPATA31D4Q6ZUB0 917 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 TAS1R1Q7RTX1 841 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 CATSPER4Q7RTX7 472 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 ZNF598Q86UK7 904 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 CABP7Q86V35 215 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 RHPN2Q8IUC4 686 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 LINC01465Q8N7H1 131 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 ZNF579Q8NAF0 562 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 TDRD5Q8NAT2 981 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 SLC22A17Q8WUG5 538 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 CRYGNQ8WXF5 182 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 RSAD2Q8WXG1 361 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 NLRP4Q96MN2 994 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 JAKMIP1Q96N16 626 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 TEKT3Q9BXF9 490 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 ZMYND12Q9H0C1 365 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 GLT8D2Q9H1C3 349 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 SUCLA2Q9P2R7 463 aaPredicted RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 CEP131Q9UPN4 1083 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 PIN4Q9Y237 131 aaKnown RBP7.41□□□□□ -1.22
CD44-221ENST00000526000 GTF3C3Q9Y5Q9 886 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 RALGAPA2Q2PPJ7 1873 aa7.41□□□□□ -1.22
CD44-221ENST00000526000 ATG2AQ2TAZ0 1938 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 hCG_1984214I3L0E3 225 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 NARSO43776 548 aaKnown RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 EIF5BO60841 1220 aaKnown RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 OFD1O75665 1012 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 DDHD2O94830 711 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 TDP2O95551 362 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 EOMESO95936 686 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 POMCP01189 267 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 SRGAP2CP0DJJ0 459 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 GNA11P29992 359 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 CIITAP33076 1130 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 PHKA2P46019 1235 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 NPEPPSP55786 919 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 ITIH3Q06033 890 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 NOMO2Q5JPE7 1267 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 PLA2G4FQ68DD2 849 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 ASTLQ6HA08 431 aaPredicted RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 SMAP1Q8IYB5 467 aaPredicted RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 ZNF713Q8N859 430 aaPredicted RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 KCNG4Q8TDN1 519 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 TBCKQ8TEA7 893 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 RABGGTAQ92696 567 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 LENG9Q96B70 501 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 IGSF21Q96ID5 467 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 FAM167AQ96KS9 214 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 KLHL5Q96PQ7 755 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 VN1R3Q9BXE9 311 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 ZBP1Q9H171 429 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 SLKQ9H2G2 1235 aaPredicted RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 CYP26B1Q9NR63 512 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 TBC1D13Q9NVG8 400 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 DACT1Q9NYF0 836 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 FBXL21Q9UKT6 434 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 FAN1Q9Y2M0 1017 aa7.4□□□□□ -1.22
CD44-221ENST00000526000 PRG3Q9Y2Y8 225 aaPredicted RBP7.4□□□□□ -1.22
CD44-221ENST00000526000 LOXHD1Q8IVV2 1947 aa7.4□□□□□ -1.23
CD44-221ENST00000526000 PLXNA4Q9HCM2 1894 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms