RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TIPINQ9BVW5 301 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 FAM49AQ9H0Q0 323 aaPredicted RBP11.43□□□□□ -0.58
SKA1-204ENST00000488454 DHX33Q9H6R0 707 aaKnown RBP11.43□□□□□ -0.58
SKA1-204ENST00000488454 MAGEF1Q9HAY2 307 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 PRDM5Q9NQX1 630 aaPredicted RBP11.43□□□□□ -0.58
SKA1-204ENST00000488454 KCND2Q9NZV8 630 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 SUCLA2Q9P2R7 463 aaPredicted RBP11.43□□□□□ -0.58
SKA1-204ENST00000488454 AKT3Q9Y243 479 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 HPSEQ9Y251 543 aa11.43□□□□□ -0.58
SKA1-204ENST00000488454 BRCA2P51587 3418 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 A0A087X0B3 334 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 FAM237AA0A1B0GTK4 181 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 ASAP2O43150 1006 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 GADD45BO75293 160 aaPredicted RBP11.42□□□□□ -0.58
SKA1-204ENST00000488454 ZNF202O95125 648 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 SLFN14P0C7P3 912 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 CLCN3P51790 818 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 SLC12A3P55017 1021 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 EMC2Q15006 297 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 RINT1Q6NUQ1 792 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 KANK3Q6NY19 840 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 RUFY4Q6ZNE9 571 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 GPBP1Q86WP2 473 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 LRRC71Q8N4P6 559 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 CNNM3Q8NE01 707 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 CAGE1Q8TC20 777 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 DNAJB3Q8WWF6 145 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 PSPC1Q8WXF1 523 aaKnown RBP11.42□□□□□ -0.58
SKA1-204ENST00000488454 TMEM143Q96AN5 459 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 ZBTB10Q96DT7 871 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 CEP89Q96ST8 783 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 HIPK3Q9H422 1215 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 BLOC1S4Q9NUP1 217 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 HOOK1Q9UJC3 728 aaKnown RBP11.42□□□□□ -0.58
SKA1-204ENST00000488454 NR2E3Q9Y5X4 410 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 FRMPD3Q5JV73 1810 aa11.42□□□□□ -0.58
SKA1-204ENST00000488454 IGKV6-21A0A0C4DH24 114 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 CAND2O75155 1236 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 RAG1P15918 1043 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 FAM160A1Q05DH4 1040 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 MXD4Q14582 209 aaPredicted RBP11.41□□□□□ -0.58
SKA1-204ENST00000488454 LONRF3Q496Y0 759 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 NAALADL2Q58DX5 795 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 C1orf186Q6ZWK4 172 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 C7orf61Q8IZ16 206 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 KIAA0319LQ8IZA0 1049 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 KIFAP3Q92845 792 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 IFT74Q96LB3 600 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 DRC1Q96MC2 740 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 SCLT1Q96NL6 688 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 TNMDQ9H2S6 317 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 GOLPH3LQ9H4A5 285 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 PDLIM7Q9NR12 457 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 PLA2G2EQ9NZK7 142 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 SERTAD1Q9UHV2 236 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 KCNG1Q9UIX4 513 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 SCN10AQ9Y5Y9 1956 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 MYH15Q9Y2K3 1946 aa11.41□□□□□ -0.58
SKA1-204ENST00000488454 RSPH10B2B2RC85 870 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 KINO60870 393 aaKnown RBP11.4□□□□□ -0.58
SKA1-204ENST00000488454 TBCAO75347 108 aaKnown RBP11.4□□□□□ -0.58
SKA1-204ENST00000488454 FAM13AO94988 1023 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 VTNP04004 478 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 RSPH10BP0C881 870 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 CKBP12277 381 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 GUCY2CP25092 1073 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 AFMP43652 599 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 RAD51AP2Q09MP3 1159 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 TFDP1Q14186 410 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 KRBA2Q6ZNG9 492 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 RPAINQ86UA6 219 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 RHPN2Q8IUC4 686 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 PRPF31Q8WWY3 499 aaKnown RBP11.4□□□□□ -0.58
SKA1-204ENST00000488454 NLRP7Q8WX94 980 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 RUSC1Q9BVN2 902 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 POLR3FQ9H1D9 316 aaPredicted RBP11.4□□□□□ -0.58
SKA1-204ENST00000488454 ZHX3Q9H4I2 956 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 LMBRD1Q9NUN5 540 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 GINS2Q9Y248 185 aa11.4□□□□□ -0.58
SKA1-204ENST00000488454 MYMKA6NI61 221 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 KIAA0355O15063 1070 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 HIP1RO75146 1068 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 PARNO95453 639 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 TIMP1P01033 207 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 SRGAP2CP0DJJ0 459 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 SELPP16109 830 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 PTMSP20962 102 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 MCM4P33991 863 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 ARL2P36404 184 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 NLRP11P59045 1033 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 MRPS6P82932 125 aaKnown RBP11.39□□□□□ -0.59
SKA1-204ENST00000488454 TMEM62Q0P6H9 643 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 LAMTOR4Q0VGL1 99 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 DRP2Q13474 957 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 PPP2R5AQ15172 486 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 ARSHQ5FYA8 562 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 LRRC8DQ7L1W4 858 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 DYMQ7RTS9 669 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 CCDC65Q8IXS2 484 aa11.39□□□□□ -0.59
SKA1-204ENST00000488454 FMR1NBQ8N0W7 255 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms