RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 DLG4P78352 724 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 MYL7Q01449 175 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 ZNF772Q68DY9 489 aaPredicted RBP19.49■□□□□ 0.71
VIM-206ENST00000487938 STYK1Q6J9G0 422 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 CTNNBL1Q8WYA6 563 aaPredicted RBP19.49■□□□□ 0.71
VIM-206ENST00000487938 THAP2Q9H0W7 228 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 DPH5Q9H2P9 285 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 SEL1LQ9UBV2 794 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 APEX2Q9UBZ4 518 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 NDUFAB1O14561 156 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 HPDP32754 393 aaPredicted RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 COPB2P35606 906 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 STXBP4Q6ZWJ1 553 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 UBLCP1Q8WVY7 318 aaPredicted RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 RFFLQ8WZ73 363 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 TRIM31Q9BZY9 425 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 TMBIM4Q9HC24 238 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 ARHGEF35A5YM69 484 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 IPO5O00410 1097 aaKnown RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 CLSTN1O94985 981 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 TMEM253P0C7T8 217 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 LSP1P33241 339 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 CTNNA1P35221 906 aaKnown RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 DCAF12L1Q5VU92 463 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 MIGA2Q7L4E1 593 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 DAW1Q8N136 415 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 SYT11Q9BT88 431 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 TEKT3Q9BXF9 490 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 RANBP17Q9H2T7 1088 aaKnown RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 HERC5Q9UII4 1024 aaKnown RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 ODF2LQ9ULJ1 636 aa19.48■□□□□ 0.71
VIM-206ENST00000487938 MRPL11Q9Y3B7 192 aaKnown RBP19.48■□□□□ 0.71
VIM-206ENST00000487938 BHMG1C9JSJ3 638 aaPredicted RBP19.47■□□□□ 0.71
VIM-206ENST00000487938 H0YGN5 161 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 DDX3YO15523 660 aaKnown RBP19.47■□□□□ 0.71
VIM-206ENST00000487938 PPATQ06203 517 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 BFSP1Q12934 665 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 ITGB3BPQ13352 177 aaPredicted RBP19.47■□□□□ 0.71
VIM-206ENST00000487938 TRMT1LQ7Z2T5 733 aaKnown RBP19.47■□□□□ 0.71
VIM-206ENST00000487938 CDAN1Q8IWY9 1227 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 CCDC26Q8TAB7 109 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 CHURC1Q8WUH1 139 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.47■□□□□ 0.71
VIM-206ENST00000487938 SH2D3AQ9BRG2 576 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 WDR11Q9BZH6 1224 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 BCCIPQ9P287 314 aaKnown RBP eCLIP19.47■□□□□ 0.71
VIM-206ENST00000487938 NFS1Q9Y697 457 aa19.47■□□□□ 0.71
VIM-206ENST00000487938 GOLGA6L10A6NI86 522 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 A6NNZ2 444 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 TRAF1Q13077 416 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 ZNF211Q13398 564 aaPredicted RBP19.46■□□□□ 0.71
VIM-206ENST00000487938 TUBB8Q3ZCM7 444 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 PACS2Q86VP3 889 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 LDHDQ86WU2 507 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 EIF1ADQ8N9N8 165 aaKnown RBP19.46■□□□□ 0.71
VIM-206ENST00000487938 LRRC45Q96CN5 670 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 TRIM51Q9BSJ1 452 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.46■□□□□ 0.713e-13■■■■□ 19.8
VIM-206ENST00000487938 ZBTB21Q9ULJ3 1066 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 COG5Q9UP83 839 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 ATP8B3O60423 1300 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 HMGB1P1B2RPK0 211 aaPredicted RBP19.46■□□□□ 0.71
VIM-206ENST00000487938 K7ENM7 598 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 MYZAPP0CAP1 466 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 SEC24CP53992 1094 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 MAPK7Q13164 816 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 PPP2R5AQ15172 486 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 PADI6Q6TGC4 694 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 EFCAB13Q8IY85 973 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 LMO3Q8TAP4 145 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 SLC20A1Q8WUM9 679 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 GLIS2Q9BZE0 524 aaPredicted RBP19.46■□□□□ 0.71
VIM-206ENST00000487938 UBE2TQ9NPD8 197 aaPredicted RBP19.46■□□□□ 0.71
VIM-206ENST00000487938 TMOD2Q9NZR1 351 aa19.46■□□□□ 0.71
VIM-206ENST00000487938 PPIP5K2O43314 1243 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 MICALL1Q8N3F8 863 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 ZSWIM2Q8NEG5 633 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 PPM1EQ8WY54 764 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 SLITRK6Q9H5Y7 841 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 EHMT1Q9H9B1 1298 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 NCANO14594 1321 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 UBE4BO95155 1302 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 ITGB5P18084 799 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 GUCY2CP25092 1073 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 MDH1P40925 334 aaKnown RBP19.45■□□□□ 0.7
VIM-206ENST00000487938 LIG3P49916 1009 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 ZNF844Q08AG5 666 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 LRIG3Q6UXM1 1119 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 AGBL1Q96MI9 1066 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 AGPAT1Q99943 283 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 MXRA8Q9BRK3 442 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 STRA6Q9BX79 667 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 CHORDC1Q9UHD1 332 aaPredicted RBP19.45■□□□□ 0.7
VIM-206ENST00000487938 UTP11Q9Y3A2 253 aaKnown RBP19.45■□□□□ 0.7
VIM-206ENST00000487938 EMSYQ7Z589 1322 aa19.45■□□□□ 0.7
VIM-206ENST00000487938 A0A087WUV0 522 aaPredicted RBP19.44■□□□□ 0.7
VIM-206ENST00000487938 CCDC172P0C7W6 258 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 EMC10Q5UCC4 262 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 AADACL2Q6P093 401 aa19.44■□□□□ 0.7
VIM-206ENST00000487938 B3GNT9Q6UX72 402 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms