RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 SCP2P22307 547 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 DNAJB2P25686 324 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 FXR1P51114 621 aaKnown RBP eCLIP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 DNM1Q05193 864 aaKnown RBP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 DMP1Q13316 513 aaPredicted RBP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 FAM109BQ6ICB4 259 aaPredicted RBP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 IFNLR1Q8IU57 520 aaPredicted RBP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 NPAS4Q8IUM7 802 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 TIFAQ96CG3 184 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 TFIP11Q9UBB9 837 aaKnown RBP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 LRRIQ4A6NIV6 560 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 E9PMD0 336 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 HOXA2O43364 376 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 TLL1O43897 1013 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 PLA2G4BP0C869 781 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 SRGAP2CP0DJJ0 459 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 AXLP30530 894 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 ABCD1P33897 745 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 RAB27AP51159 221 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 EFNA5P52803 228 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 PTENP60484 403 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 KARSQ15046 597 aaKnown RBP16.21■□□□□ 0.19
LIMS3-205ENST00000487150 FOXD4L6Q3SYB3 417 aaPredicted RBP16.21■□□□□ 0.19
LIMS3-205ENST00000487150 ZNF697Q5TEC3 545 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 RRAGBQ5VZM2 374 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 FOXD4L3Q6VB84 417 aaPredicted RBP16.21■□□□□ 0.19
LIMS3-205ENST00000487150 SLC24A5Q71RS6 500 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 CATSPER4Q7RTX7 472 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 DEPTORQ8TB45 409 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 LARP4BQ92615 738 aaKnown RBP16.21■□□□□ 0.19
LIMS3-205ENST00000487150 RAD54LQ92698 747 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 CCDC51Q96ER9 411 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 SPATA32Q96LK8 384 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 PNMA5Q96PV4 448 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 YME1L1Q96TA2 773 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 RAD9AQ99638 391 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 CUEDC2Q9H467 287 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 CDHR5Q9HBB8 845 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 IFT122Q9HBG6 1241 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 FAM13BQ9NYF5 915 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 ODF2LQ9ULJ1 636 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 INSL6Q9Y581 213 aa16.21■□□□□ 0.19
LIMS3-205ENST00000487150 TRIP12Q14669 1992 aaPredicted RBP16.2■□□□□ 0.18
LIMS3-205ENST00000487150 H0YCG3 227 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 INO80B-WBP1J3KQ70 363 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 GLRA2P23416 452 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 STAT6P42226 847 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 SARSP49591 514 aaKnown RBP16.2■□□□□ 0.18
LIMS3-205ENST00000487150 SLC12A3P55017 1021 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 DEFB103AP81534 67 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 GRIN1Q05586 938 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 CAPSQ13938 189 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 CDCA2Q69YH5 1023 aaPredicted RBP16.2■□□□□ 0.18
LIMS3-205ENST00000487150 RINT1Q6NUQ1 792 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 TOP1MTQ969P6 601 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 EPSTI1Q96J88 318 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 PRIMPOLQ96LW4 560 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 CLIC6Q96NY7 704 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 ADAM2Q99965 735 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 TRAIPQ9BWF2 469 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 PBX4Q9BYU1 374 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 LRRC27Q9C0I9 530 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 ELAC1Q9H777 363 aaKnown RBP16.2■□□□□ 0.18
LIMS3-205ENST00000487150 SLC28A3Q9HAS3 691 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 MAGEF1Q9HAY2 307 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 RGS18Q9NS28 235 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 AGPAT5Q9NUQ2 364 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 LARSQ9P2J5 1176 aaKnown RBP16.2■□□□□ 0.18
LIMS3-205ENST00000487150 RCOR1Q9UKL0 485 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 LRFN2Q9ULH4 789 aa16.2■□□□□ 0.18
LIMS3-205ENST00000487150 PIN4Q9Y237 131 aaKnown RBP16.2■□□□□ 0.18
LIMS3-205ENST00000487150 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 ENPP3O14638 875 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 TBCAO75347 108 aaKnown RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 KRT18P05783 430 aaKnown RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 DDIT3P35638 169 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 SMTNP53814 917 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 MAPK6Q16659 721 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 CSPP1Q1MSJ5 1256 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 C1orf186Q6ZWK4 172 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 MAEAQ7L5Y9 396 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 KCNK18Q7Z418 384 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 APBB1IPQ7Z5R6 666 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 GPBP1Q86WP2 473 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 KSR1Q8IVT5 923 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 SLC17A8Q8NDX2 589 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 ASAP3Q8TDY4 903 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 ZNF668Q96K58 619 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 OSBPL7Q9BZF2 842 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 TMX1Q9H3N1 280 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 GPRC5CQ9NQ84 441 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 PRMT7Q9NVM4 692 aaPredicted RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 ZDHHC9Q9Y397 364 aa16.19■□□□□ 0.18
LIMS3-205ENST00000487150 RBM19Q9Y4C8 960 aaKnown RBP16.19■□□□□ 0.18
LIMS3-205ENST00000487150 A0A087WWV3 80 aa16.18■□□□□ 0.18
LIMS3-205ENST00000487150 SOX1O00570 391 aaPredicted RBP16.18■□□□□ 0.18
LIMS3-205ENST00000487150 HIP1RO75146 1068 aa16.18■□□□□ 0.18
LIMS3-205ENST00000487150 TCTN1Q2MV58 587 aa16.18■□□□□ 0.18
LIMS3-205ENST00000487150 PPP2R2DQ66LE6 453 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms