RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 STAT1P42224 750 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 IFI35P80217 286 aaPredicted RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 FBXO25Q8TCJ0 367 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 COA7Q96BR5 231 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 IFT74Q96LB3 600 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 HOMER3Q9NSC5 361 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 GCNT4Q9P109 453 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 JAG2Q9Y219 1238 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 NR2E1Q9Y466 385 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 L3MBTL1Q9Y468 752 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 USP15Q9Y4E8 981 aaPredicted RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 NPHP3-ACAD11A0A0J9YXS1 232 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 KIAA0391O15091 583 aaKnown RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 UBOX5O94941 541 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 ZBTB7AO95365 584 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 HSPA6P17066 643 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 IFNAR2P48551 515 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 CDK8P49336 464 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 NCALDP61601 193 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 KNOP1Q1ED39 458 aaKnown RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 DCAF12L1Q5VU92 463 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 TCERG1LQ5VWI1 586 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 ZDHHC24Q6UX98 284 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 BZW1Q7L1Q6 419 aaKnown RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 SLC35G2Q8TBE7 412 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 SETDB2Q96T68 719 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 NAP1L4Q99733 375 aaKnown RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 MOV10L1Q9BXT6 1211 aaKnown RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 ECT2Q9H8V3 914 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 OSGEPQ9NPF4 335 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 SAP30BPQ9UHR5 308 aaKnown RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 AGAP1Q9UPQ3 857 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 SNX24Q9Y343 169 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 RPTORQ8N122 1335 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 SUN1O94901 812 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 RARAP10276 462 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 KRT13P13646 458 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 SF3A3Q12874 501 aaKnown RBP eCLIP14.36□□□□□ -0.115e-6■■■■■ 39.5
USP40-214ENST00000483519 PLS1Q14651 629 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 C16orf86Q6ZW13 317 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 DYDC1Q8WWB3 177 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 GLG1Q92896 1179 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 PDGFDQ9GZP0 370 aaPredicted RBP14.36□□□□□ -0.11
USP40-214ENST00000483519 SIX2Q9NPC8 291 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 PPP1R9AQ9ULJ8 1098 aa14.36□□□□□ -0.11
USP40-214ENST00000483519 GTPBP10A4D1E9 387 aaKnown RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 USP17L5A8MUK1 530 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 PODXLO00592 558 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 SLC16A3O15427 465 aaKnown RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 OAS1P00973 400 aaKnown RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 CHRNA3P32297 505 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 GCKP35557 465 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 ALDH5A1P51649 535 aaPredicted RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 PPP4CP60510 307 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 RPS8P62241 208 aaKnown RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 KCNJ2P63252 427 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 PPATQ06203 517 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 CNGA2Q16280 664 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 WDR66Q8TBY9 1149 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 CEP95Q96GE4 821 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 CCDC113Q9H0I3 377 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 SYNGAP1Q96PV0 1343 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 POTEB3A0JP26 581 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 POTECB2RU33 542 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 PDXKO00764 312 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 RASGRF2O14827 1237 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 PHF2O75151 1096 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 RPL13P26373 211 aaKnown RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 ASPRV1Q53RT3 343 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 POTEBQ6S5H4 581 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 ADAT2Q7Z6V5 191 aaKnown RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 MAPKAPK5Q8IW41 473 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 ARMC2Q8NEN0 867 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 SLC30A5Q8TAD4 765 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 KLHL29Q96CT2 875 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 SPDL1Q96EA4 605 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 RUNDC3BQ96NL0 473 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 TAOK3Q9H2K8 898 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 ERVK-5Q9HDB9 667 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 CD2APQ9Y5K6 639 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 O00370 1275 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 IGF2BP3O00425 579 aaKnown RBP eCLIP14.35□□□□□ -0.11
USP40-214ENST00000483519 TM4SF1P30408 202 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 COPS2P61201 443 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 GRIK3Q13003 919 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 GALNTL6Q49A17 601 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 NAIF1Q69YI7 327 aaPredicted RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 LNX1Q8TBB1 728 aaPredicted RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 GRHL1Q9NZI5 618 aa14.35□□□□□ -0.11
USP40-214ENST00000483519 AJAP1Q9UKB5 411 aaPredicted RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 ATF5Q9Y2D1 282 aaPredicted RBP14.35□□□□□ -0.11
USP40-214ENST00000483519 LIN7AO14910 233 aaPredicted RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 EVI5O60447 810 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 LDHCP07864 332 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 COPB2P35606 906 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 LACTBP83111 547 aaPredicted RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 MAP2K1Q02750 393 aaPredicted RBP14.34□□□□□ -0.11
USP40-214ENST00000483519 TNFAIP8L3Q5GJ75 292 aa14.34□□□□□ -0.11
USP40-214ENST00000483519 MFSD5Q6N075 450 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms