RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 EFNA5P52803 228 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PTENP60484 403 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 FPGSQ05932 587 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 FAM160A1Q05DH4 1040 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 LAMTOR4Q0VGL1 99 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 DMP1Q13316 513 aaPredicted RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 MKRN4PQ13434 485 aaPredicted RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 GIT2Q14161 759 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 FBXO47Q5MNV8 452 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PSRC1Q6PGN9 363 aaPredicted RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 TSHZ1Q6ZSZ6 1077 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 SH3RF1Q7Z6J0 888 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 GPBP1Q86WP2 473 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 RHPN2Q8IUC4 686 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 ZBTB8OSQ8IWT0 167 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 CCDC65Q8IXS2 484 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 LRRC71Q8N4P6 559 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 CNNM3Q8NE01 707 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 SPIRE2Q8WWL2 714 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PRPF31Q8WWY3 499 aaKnown RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 NLRP7Q8WX94 980 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 SEPT8Q92599 483 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 TMEM143Q96AN5 459 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 DHX58Q96C10 678 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PRIMPOLQ96LW4 560 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 SH2D3AQ9BRG2 576 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PANK2Q9BZ23 570 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PPP1R12CQ9BZL4 782 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 POLR3FQ9H1D9 316 aaPredicted RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 ADAMTS10Q9H324 1103 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 TMEM134Q9H6X4 195 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PARVGQ9HBI0 331 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 IL23AQ9NPF7 189 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 CHST12Q9NRB3 414 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 A0A087WWV3 80 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 ABHD14A-ACY1A0A1B0GW23 586 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 HIP1RO75146 1068 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 PRPF40AO75400 957 aaKnown RBP9.12□□□□□ -0.95
USP54-212ENST00000480210 RPS6KA5O75582 802 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 BAIAP3O94812 1187 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 FAM13AO94988 1023 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 VTNP04004 478 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 PLS3P13797 630 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 DARSP14868 501 aaKnown RBP9.12□□□□□ -0.95
USP54-212ENST00000480210 SFPQP23246 707 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP54-212ENST00000480210 GLRA2P23416 452 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 CYP2C18P33260 490 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 NDUFA8P51970 172 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 ZNF131P52739 623 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 PSMD2Q13200 908 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 ALCAMQ13740 583 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 FAM187BQ17R55 369 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 PLEKHG4Q58EX7 1191 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 ARSHQ5FYA8 562 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 CNKSR3Q6P9H4 555 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 TRAF7Q6Q0C0 670 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 KRBA2Q6ZNG9 492 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 STXBP4Q6ZWJ1 553 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 FMR1NBQ8N0W7 255 aaPredicted RBP9.12□□□□□ -0.95
USP54-212ENST00000480210 RNF149Q8NC42 400 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 ENGASEQ8NFI3 743 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 DEPTORQ8TB45 409 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 PPP1R13LQ8WUF5 828 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 DDX12PQ92771 950 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 BADQ92934 168 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 TRIM44Q96DX7 344 aaPredicted RBP9.12□□□□□ -0.95
USP54-212ENST00000480210 SCLT1Q96NL6 688 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 RUSC1Q9BVN2 902 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 ST6GALNAC4Q9H4F1 302 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 PRMT7Q9NVM4 692 aaPredicted RBP9.12□□□□□ -0.95
USP54-212ENST00000480210 SERTAD1Q9UHV2 236 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 TTC3P53804 2025 aa9.12□□□□□ -0.95
USP54-212ENST00000480210 A0A087WZ62 844 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 A0A087X0B3 334 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 FRMD3A2A2Y4 597 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 MYMKA6NI61 221 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 K7ERI5 159 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 ACTN4O43707 911 aaKnown RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 GTPBP6O43824 516 aaPredicted RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 TRAK2O60296 914 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 KINO60870 393 aaKnown RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 FGBP02675 491 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 SRGAP2CP0DJJ0 459 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 SKIP12755 728 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 ZSCAN20P17040 1043 aaPredicted RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 CCL23P55773 120 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 PAK2Q13177 524 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 SNW1Q13573 536 aaKnown RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 IKBKEQ14164 716 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 DHX8Q14562 1220 aaKnown RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 MAPK6Q16659 721 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 KIZQ2M2Z5 673 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 LONRF3Q496Y0 759 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 TAF3Q5VWG9 929 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 CDCA2Q69YH5 1023 aaPredicted RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 UNC13DQ70J99 1090 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 MAEAQ7L5Y9 396 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 APBB1IPQ7Z5R6 666 aaPredicted RBP9.11□□□□□ -0.95
USP54-212ENST00000480210 MYCT1Q8N699 235 aa9.11□□□□□ -0.95
USP54-212ENST00000480210 RSPH1Q8WYR4 309 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms