RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PDIA5Q14554 519 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 CCDC137Q6PK04 289 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 INTS8Q75QN2 995 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 LMNTD2Q8IXW0 634 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 TGFBRAP1Q8WUH2 860 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 THAP2Q9H0W7 228 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 CARD9Q9H257 536 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 A6NHS1 94 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 ANKRD63C9JTQ0 380 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 TUBP50607 506 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 MARSP56192 900 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 SESN3P58005 492 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 UBE4AQ14139 1066 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 DDX25Q9UHL0 483 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 ALS2Q96Q42 1657 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 A0A0A6YYK5 440 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 AKAP3O75969 853 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 TARSP26639 723 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 PRKCIP41743 596 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 MARCKSL1P49006 195 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 SH3RF3Q8TEJ3 882 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 PIDD1Q9HB75 910 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 CNOT7Q9UIV1 285 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 BRAFP15056 766 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 IL6STP40189 918 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 ADCY7P51828 1080 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 PPP2R5EQ16537 467 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 ANO7Q6IWH7 933 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 ZNF449Q6P9G9 518 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 FAM43BQ6ZT52 329 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 MAPKAPK5Q8IW41 473 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 KRT35Q92764 455 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 LZTS2Q9BRK4 669 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 SPZ1Q9BXG8 430 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 TAOK3Q9H2K8 898 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 TAS2R14Q9NYV8 317 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 PFASO15067 1338 aa20.23■□□□□ 0.83
CCDC88B-207ENST00000479965 TTC27Q6P3X3 843 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 ASRGL1Q7L266 308 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 CROCCP2Q86T23 111 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 LONP2Q86WA8 852 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 RAB3IPQ96QF0 476 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 ZCWPW1Q9H0M4 648 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 LIN7AO14910 233 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 MGAT5Q09328 741 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 ARHGAP44Q17R89 818 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 PRELID2Q8N945 189 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 TEKT4Q8WW24 435 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 POP1Q99575 1024 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 HAO1Q9UJM8 370 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 MAP3K13O43283 966 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 PHF2O75151 1096 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 ERP27Q96DN0 273 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 NUDCD1Q96RS6 583 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 TTC7AQ9ULT0 858 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 MINPP1Q9UNW1 487 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 KIF13AQ9H1H9 1805 aa20.22■□□□□ 0.83
CCDC88B-207ENST00000479965 MEIS1O00470 390 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 FERP16591 822 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 RAB27AP51159 221 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 CALCOCO2Q13137 446 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 CNBD1Q8NA66 436 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 UTP4Q969X6 686 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 CTTNBP2NLQ9P2B4 639 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 PCDHA2Q9Y5H9 948 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 USP17L5A8MUK1 530 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 UNC5CO95185 931 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 GJB6O95452 261 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 RARGP13631 454 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 EPHA7Q15375 998 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 TMEM154Q6P9G4 183 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 VSTM1Q6UX27 236 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 C3orf67Q6ZVT6 689 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 ECHDC2Q86YB7 292 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 CDC42EP4Q9H3Q1 356 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 USP40Q9NVE5 1235 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 PARP2Q9UGN5 583 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 ALG6Q9Y672 507 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 COL18A1P39060 1754 aa20.21■□□□□ 0.83
CCDC88B-207ENST00000479965 FESP07332 822 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 CYP11B2P19099 503 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 STAT3P40763 770 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 PTGIRP43119 386 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 NPEPPSP55786 919 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 EIF6P56537 245 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 MPP2Q14168 576 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 DIXDC1Q155Q3 683 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 DPY19L2P1Q6NXN4 242 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 BTNL9Q6UXG8 535 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 PALB2Q86YC2 1186 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 SRRM1Q8IYB3 904 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 PITPNM3Q9BZ71 974 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 PPP1R12CQ9BZL4 782 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 RNPEPL1Q9HAU8 725 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 CCDC88AQ3V6T2 1871 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 CACNA1SQ13698 1873 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 EDIL3O43854 480 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 AHCYL1O43865 530 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 LRRN2O75325 713 aa20.2■□□□□ 0.82
CCDC88B-207ENST00000479965 TNFAIP3P21580 790 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms