RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 RMI1Q9H9A7 625 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 LRRC4BQ9NT99 713 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ANKIB1Q9P2G1 1089 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 DDX25Q9UHL0 483 aaKnown RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 CTDP1Q9Y5B0 961 aaPredicted RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 IGSF9BQ9UPX0 1349 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 CYP3A7-CYP3A51PA0A087WV96 503 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 FOXO6A8MYZ6 492 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 SMAPO00193 183 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 IGF2BP3O00425 579 aaKnown RBP eCLIP9.08□□□□□ -0.96
VAPB-205ENST00000476395 ONECUT3O60422 494 aaPredicted RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 BAG3O95817 575 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ITGA4P13612 1032 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ATP4AP20648 1035 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 CYP3A7P24462 503 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ICA1Q05084 483 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 GIT2Q14161 759 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 EPHA7Q15375 998 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 KRT71Q3SY84 523 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ANKRD20A2Q5SQ80 823 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ANKRD20A1Q5TYW2 823 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 SFMBT2Q5VUG0 894 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ANKRD20A3Q5VUR7 823 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 SLC30A5Q8TAD4 765 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ATP8B4Q8TF62 1192 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 CEP63Q96MT8 703 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 CELF4Q9BZC1 486 aaKnown RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 DDX47Q9H0S4 455 aaKnown RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 NKX1-2Q9UD57 310 aaPredicted RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 GGA2Q9UJY4 613 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 SLC12A4Q9UP95 1085 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 A6NNZ2 444 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L15C9J2P7 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L13C9JLJ4 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L11C9JVI0 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L18D6R9N7 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L22D6RA61 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L17D6RBQ6 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L19D6RCP7 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L20D6RJB6 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 hCG_1984214I3L0E3 225 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 PON1P27169 355 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 GSTO1P78417 241 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ARID5AQ03989 594 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L24Q0WX57 530 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 TUBB8Q3ZCM7 444 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 FAM26FQ5R3K3 315 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 GJB7Q6PEY0 223 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 USP17L6PQ6QN14 398 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 ZNF713Q8N859 430 aaPredicted RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 PHC3Q8NDX5 983 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 CCDC47Q96A33 483 aaKnown RBP9.08□□□□□ -0.96
VAPB-205ENST00000476395 MLXIPLQ9NP71 852 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 GPCPD1Q9NPB8 672 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 PCDHAC2Q9Y5I4 1007 aa9.08□□□□□ -0.96
VAPB-205ENST00000476395 PNMA6FA0A0J9YX94 578 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 AKAP3O75969 853 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 KCNH2Q12809 1159 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 CFAP221Q4G0U5 840 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 CATSPER3Q86XQ3 398 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 RASGEF1CQ8N431 466 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 FIZ1Q96SL8 496 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 SELENOSQ9BQE4 189 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 DPH5Q9H2P9 285 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 LMCD1Q9NZU5 365 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 KIAA1024Q9UPX6 916 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 TRAF3IP3Q9Y228 551 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 POTEFA5A3E0 1075 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 SPDYE3A6NKU9 549 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 RSPH10B2B2RC85 870 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 CES2O00748 559 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 DAPK3O43293 454 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 PLA2G4BP0C869 781 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 RSPH10BP0C881 870 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 POTEIP0CG38 1075 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 SETSIPP0DME0 302 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 CHN1P15882 459 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 COPB2P35606 906 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 CASP4P49662 377 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 IFFO1Q0D2I5 559 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 PPP1R15BQ5SWA1 713 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 POTEGQ6S5H5 508 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 POTEEQ6S8J3 1075 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 DPP8Q6V1X1 898 aaPredicted RBP9.07□□□□□ -0.96
VAPB-205ENST00000476395 LNX1Q8TBB1 728 aaPredicted RBP9.07□□□□□ -0.96
VAPB-205ENST00000476395 ALS2CR12Q96Q35 445 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 OCEL1Q9H607 264 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 PLCB1Q9NQ66 1216 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 NOP53Q9NZM5 478 aaKnown RBP9.07□□□□□ -0.96
VAPB-205ENST00000476395 NAGPAQ9UK23 515 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 TLDC2A0PJX2 215 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 TRAF5O00463 557 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 DDX3XO00571 662 aaKnown RBP eCLIP9.07□□□□□ -0.96
VAPB-205ENST00000476395 UCHL3P15374 230 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 NAT1P18440 290 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 PRKCIP41743 596 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 RANBP1P43487 201 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 TNNI2P48788 182 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 USP11P51784 963 aa9.07□□□□□ -0.96
VAPB-205ENST00000476395 NCALDP61601 193 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms