RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 IGSF5Q9NSI5 407 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 PACSIN3Q9UKS6 424 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 FAM221BA6H8Z2 402 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 CCDC85CA6NKD9 419 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 ITGB1P05556 798 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 HNRNPLP14866 589 aaKnown RBP eCLIP5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 FNTBP49356 437 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 CLK3P49761 638 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 RASA3Q14644 834 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 MYBPC3Q14896 1274 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 DGKDQ16760 1214 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 PROKR1Q8TCW9 393 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 THAP3Q8WTV1 239 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 ZNF428Q96B54 188 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 MAML3Q96JK9 1138 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 ENKD1Q9H0I2 346 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 ZNF768Q9H5H4 540 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 TRIM39Q9HCM9 518 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 KDM2BQ8NHM5 1336 aa5.38□□□□□ -1.55
CCDC88A-212ENST00000474059 EFCAB14O75071 495 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 LMO1P25800 156 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 KRTAP10-11P60412 298 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 SERINC3Q13530 473 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 FAM214AQ32MH5 1076 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 BEND2Q8NDZ0 799 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 C16orf92Q96LL3 132 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 BOCQ9BWV1 1114 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 POLR3BQ9NW08 1133 aaPredicted RBP5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 DNAI1Q9UI46 699 aa5.37□□□□□ -1.55
CCDC88A-212ENST00000474059 A0A0A6YYK5 440 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 CENPVL1A0A0U1RR11 272 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 AHRRA9YTQ3 701 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 HIP1RO75146 1068 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 C21orf58P58505 322 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 FAM189BP81408 668 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 SPIDRQ14159 915 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 SLFN12LQ6IEE8 588 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 C2orf69Q8N8R5 385 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 JMYQ8N9B5 988 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 MAGEB10Q96LZ2 347 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 SOX7Q9BT81 388 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 KCMF1Q9P0J7 381 aa5.36□□□□□ -1.55
CCDC88A-212ENST00000474059 GOLGA6L6A8MZA4 724 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 ROM1Q03395 351 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 DCAF17Q5H9S7 520 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 HECTD2Q5U5R9 776 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 CREB3L3Q68CJ9 461 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 MFSD5Q6N075 450 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 OLFML1Q6UWY5 402 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 BMP8AQ7Z5Y6 402 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 CKAP2LQ8IYA6 745 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 DYDC2Q96IM9 177 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 WDR92Q96MX6 357 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 IPO9Q96P70 1041 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 CPEB1Q9BZB8 566 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 PITHD1Q9GZP4 211 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 SFMBT1Q9UHJ3 866 aa5.35□□□□□ -1.55
CCDC88A-212ENST00000474059 LPXNO60711 386 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 GLRX3O76003 335 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 RHOBTB3O94955 611 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 NPTXRO95502 500 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 ABHD16AO95870 558 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 JUNP05412 331 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 KIF11P52732 1056 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 MRPS21P82921 87 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 Q6YL49 198 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 KANSL1Q7Z3B3 1105 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 ST8SIA2Q92186 375 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 TOR3AQ9H497 397 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 PTGFRNQ9P2B2 879 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 SORCS3Q9UPU3 1222 aa5.34□□□□□ -1.55
CCDC88A-212ENST00000474059 GOLGA8BA8MQT2 603 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 MASP2O00187 686 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 MTSS1O43312 755 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 KRT37O76014 449 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 STK10O94804 968 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 TYRP1P17643 537 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 HK1P19367 917 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 PTX3P26022 381 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 KIR2DL3P43628 341 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 LY6G5CQ5SRR4 150 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 NBPF6Q5VWK0 638 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 ESRP1Q6NXG1 681 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 KCNV1Q6PIU1 500 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 GLCCI1Q86VQ1 547 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 CMTM4Q8IZR5 234 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 CPT1CQ8TCG5 803 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 NAF1Q96HR8 494 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 NBPF4Q96M43 638 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 R3HDMLQ9H3Y0 253 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 ALG13Q9NP73 1137 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 DKK2Q9UBU2 259 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 ZNHIT2Q9UHR6 403 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 RCAN3Q9UKA8 241 aa5.33□□□□□ -1.56
CCDC88A-212ENST00000474059 UBA6A0AVT1 1052 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 ZAR1LA6NP61 321 aa5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 M0R2C6 588 aa5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 ZNF37AP17032 561 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 CSRP2Q16527 193 aa5.32□□□□□ -1.56
CCDC88A-212ENST00000474059 PLEKHG4Q58EX7 1191 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms