RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 RASSF8Q8NHQ8 419 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 TCP11Q8WWU5 503 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 NOC4LQ9BVI4 516 aaKnown RBP9.7□□□□□ -0.86
COL28A1-205ENST00000453441 TIPINQ9BVW5 301 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 FTOQ9C0B1 505 aaKnown RBP eCLIP9.7□□□□□ -0.86
COL28A1-205ENST00000453441 CSRNP2Q9H175 543 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 HIPK3Q9H422 1215 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 FAM13BQ9NYF5 915 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 STK17AQ9UEE5 414 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 KIAA1024Q9UPX6 916 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 ARID2Q68CP9 1835 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 TCHHQ07283 1943 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 IGKV6-21A0A0C4DH24 114 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 ARHGEF35A5YM69 484 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 ASAP2O43150 1006 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 EYA4O95677 639 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 SELPP16109 830 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 POLGP54098 1239 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 IGBP1P78318 339 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 TMEM119Q4V9L6 283 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 FAM26DQ5JW98 314 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 ODR4Q5SWX8 454 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 ADALQ6DHV7 355 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 MFSD5Q6N075 450 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 USP38Q8NB14 1042 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 LEO1Q8WVC0 666 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 CTAGE1Q96RT6 745 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 LBHD1Q9BQE6 289 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 MMTAG2Q9BU76 263 aaKnown RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 TANC1Q9C0D5 1861 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 LRRC27Q9C0I9 530 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 CUEDC2Q9H467 287 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 DHX33Q9H6R0 707 aaKnown RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 ATP6V0A4Q9HBG4 840 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 PRDM5Q9NQX1 630 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 DDX19AQ9NUU7 478 aaKnown RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 WRAP73Q9P2S5 460 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-205ENST00000453441 KCNG1Q9UIX4 513 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 SQORQ9Y6N5 450 aa9.69□□□□□ -0.86
COL28A1-205ENST00000453441 MKI67P46013 3256 aaKnown RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 A0A1W2PQ27 194 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 A0A1W2PQ64 194 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 A0A1W2PQD8 194 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 CKBP12277 381 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 PPIGQ13427 754 aaKnown RBP eCLIP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 MXD4Q14582 209 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 EMC2Q15006 297 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 TRIM71Q2Q1W2 868 aaKnown RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 FOXD4L6Q3SYB3 417 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 PLA2G4FQ68DD2 849 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 EFCAB12Q6NXP0 572 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 FOXD4L3Q6VB84 417 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 LRRC8DQ7L1W4 858 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 RPUSD2Q8IZ73 545 aaKnown RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 LINC01465Q8N7H1 131 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 PRR7Q8TB68 274 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 PSPC1Q8WXF1 523 aaKnown RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 DHX38Q92620 1227 aaKnown RBP9.68□□□□□ -0.86
COL28A1-205ENST00000453441 CEP89Q96ST8 783 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 MAGEF1Q9HAY2 307 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 PCDHA7Q9UN72 937 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 EVPLQ92817 2033 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 LTBP2Q14767 1821 aa9.68□□□□□ -0.86
COL28A1-205ENST00000453441 DNAH12Q6ZR08 3092 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 PHLPP2Q6ZVD8 1323 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 TRIM43BA6NCK2 446 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 GOLGA6L4A6NEF3 574 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 PP2D1A8MPX8 630 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 RSPH10B2B2RC85 870 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 GFRA3O60609 400 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 RSPH10BP0C881 870 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 CYP11B2P19099 503 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 SCP2P22307 547 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 CMA1P23946 247 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 THPOP40225 353 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 NPEPPSP55786 919 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 MRPS6P82932 125 aaKnown RBP9.67□□□□□ -0.86
COL28A1-205ENST00000453441 ZNF200P98182 395 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-205ENST00000453441 GRIN1Q05586 938 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 FPGSQ05932 587 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 POU5F1BQ06416 359 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 GRB10Q13322 594 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 TFDP1Q14186 410 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 PCBP1Q15365 356 aaKnown RBP eCLIP9.67□□□□□ -0.86
COL28A1-205ENST00000453441 AXDND1Q5T1B0 1012 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-205ENST00000453441 ZNF697Q5TEC3 545 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 RRAGBQ5VZM2 374 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 RESP18Q5W5W9 173 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 ZNF410Q86VK4 478 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 KIAA0319LQ8IZA0 1049 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 METTL13Q8N6R0 699 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 SYT2Q8N9I0 419 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-205ENST00000453441 IQUBQ8NA54 791 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 PIGOQ8TEQ8 1089 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 TRAPPC12Q8WVT3 735 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 KIFAP3Q92845 792 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 TRIM43Q96BQ3 446 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-205ENST00000453441 CCDC34Q96HJ3 373 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 CLIC6Q96NY7 704 aa9.67□□□□□ -0.86
COL28A1-205ENST00000453441 PNMA5Q96PV4 448 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms