RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 CD2APQ9Y5K6 639 aa20.7■□□□□ 0.91
HMGA1-205ENST00000447654 SIGLEC16A6NMB1 481 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 EIF4E1BA6NMX2 242 aaKnown RBP20.7■□□□□ 0.9
HMGA1-205ENST00000447654 ATP6V1G1O75348 118 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 FGRP09769 529 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 RASSF2P50749 326 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 PMS2P54278 862 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 CACNA2D1P54289 1103 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 PPARDQ03181 441 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 ZNF174Q15697 407 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 MAN2A1Q16706 1144 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 ZNF526Q8TF50 670 aaPredicted RBP20.7■□□□□ 0.9
HMGA1-205ENST00000447654 EPB41L4BQ9H329 900 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 CUEDC2Q9H467 287 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 PNMA3Q9UL41 463 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 ATP8A1Q9Y2Q0 1164 aa20.7■□□□□ 0.9
HMGA1-205ENST00000447654 hCG_1642624A0A1W2PR95 340 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 TJP3O95049 919 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 KLRC1P26715 233 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 DRG2P55039 364 aaKnown RBP20.69■□□□□ 0.9
HMGA1-205ENST00000447654 GRAPQ13588 217 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 SLC18A3Q16572 532 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 GRAPLQ8TC17 118 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-205ENST00000447654 GATA6Q92908 595 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 FAM163AQ96GL9 167 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-205ENST00000447654 ZSCAN10Q96SZ4 725 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-205ENST00000447654 MTFR1LQ9H019 292 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 PREBQ9HCU5 417 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 DISC1Q9NRI5 854 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 TTC7AQ9ULT0 858 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-205ENST00000447654 POTEFA5A3E0 1075 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 KRIT1O00522 736 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 CEP104O60308 925 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 POTEIP0CG38 1075 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 POTEJP0CG39 1038 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 MYBL1P10243 752 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 GYS1P13807 737 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 LSAMPQ13449 338 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 POTEEQ6S8J3 1075 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 LONP2Q86WA8 852 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 DPH5Q9H2P9 285 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 AZI2Q9H6S1 392 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 IL1RAPL1Q9NZN1 696 aa20.69■□□□□ 0.9
HMGA1-205ENST00000447654 NOC2LQ9Y3T9 749 aaKnown RBP20.69■□□□□ 0.9
HMGA1-205ENST00000447654 BAZ2BQ9UIF8 2168 aaKnown RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FAM205CA6NFA0 338 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 AFPP02771 609 aaKnown RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 ANKRD40Q6AI12 368 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FAM13CQ8NE31 585 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 ROPN1BQ9BZX4 212 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 ROPN1Q9HAT0 212 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FAM207AQ9NSI2 230 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FGFR1OP2Q9NVK5 253 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 KBTBD4Q9NVX7 518 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 UBR3Q6ZT12 1888 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 PALM3A6NDB9 673 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 TRAFD1O14545 582 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FAM200BP0CF97 657 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 ZBTB48P10074 688 aaPredicted RBP20.68■□□□□ 0.9
HMGA1-205ENST00000447654 KCNA3P22001 575 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FUT2Q10981 343 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 FAM47AQ5JRC9 791 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 MMRN2Q9H8L6 949 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 WDR37Q9Y2I8 494 aa20.68■□□□□ 0.9
HMGA1-205ENST00000447654 EPHB6O15197 1021 aa20.67■□□□□ 0.9
HMGA1-205ENST00000447654 HNRNPCL1O60812 293 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 PLEKHA8P1O95397 391 aa20.67■□□□□ 0.9
HMGA1-205ENST00000447654 RPL13P26373 211 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 POU5F1Q01860 360 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 Q4G0T1 1027 aa20.67■□□□□ 0.9
HMGA1-205ENST00000447654 TDRD12Q587J7 1177 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 EARS2Q5JPH6 523 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 RNF168Q8IYW5 571 aaPredicted RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 SPATA16Q9BXB7 569 aa20.67■□□□□ 0.9
HMGA1-205ENST00000447654 DDX47Q9H0S4 455 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 NMRK1Q9NWW6 199 aa20.67■□□□□ 0.9
HMGA1-205ENST00000447654 CEP72Q9P209 647 aa20.67■□□□□ 0.9
HMGA1-205ENST00000447654 SEC63Q9UGP8 760 aaKnown RBP20.67■□□□□ 0.9
HMGA1-205ENST00000447654 FAM187AA6NFU0 413 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 TCP11X1B4DZS4 312 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 INHBCP55103 352 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 RNASE9P60153 205 aaKnown RBP20.66■□□□□ 0.9
HMGA1-205ENST00000447654 PHC3Q8NDX5 983 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 CKAP2Q8WWK9 683 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 LZTS2Q9BRK4 669 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 CARD9Q9H257 536 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 ZDHHC18Q9NUE0 388 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 TRIM33Q9UPN9 1127 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 ATP6V0A2Q9Y487 856 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 CETN3O15182 167 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 ATP5DP30049 168 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 SERPINB4P48594 390 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 GPSM2P81274 684 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 TROAPQ12815 778 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 RCN2Q14257 317 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 CLUL1Q15846 466 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 PKN1Q16512 942 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 CNPY1Q3B7I2 92 aa20.66■□□□□ 0.9
HMGA1-205ENST00000447654 SFMBT2Q5VUG0 894 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms