RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 TRIM68Q6AZZ1 485 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 SLFN12LQ6IEE8 588 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 LHFPL2Q6ZUX7 228 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 USP30Q70CQ3 517 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 GPR135Q8IZ08 494 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 RPUSD2Q8IZ73 545 aaKnown RBP3.33□□□□□ -1.88
PTPRC-208ENST00000427110 OR5AN1Q8NGI8 311 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 COG1Q8WTW3 980 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 RTF1Q92541 710 aaKnown RBP3.33□□□□□ -1.88
PTPRC-208ENST00000427110 BORCS6Q96GS4 357 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 SMAD5Q99717 465 aaKnown RBP3.33□□□□□ -1.88
PTPRC-208ENST00000427110 OR10A2Q9H208 303 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 TMPRSS5Q9H3S3 457 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 AGO3Q9H9G7 860 aaKnown RBP3.33□□□□□ -1.88
PTPRC-208ENST00000427110 ACSS2Q9NR19 701 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 FBXO10Q9UK96 956 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 SPO11Q9Y5K1 396 aa3.33□□□□□ -1.88
PTPRC-208ENST00000427110 UBA6A0AVT1 1052 aaPredicted RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 C1QTNF3-AMACRE9PGA6 284 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 KATNA1O75449 491 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 RAD17O75943 681 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 APOL3O95236 402 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 AMHP03971 560 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 CYP17A1P05093 508 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 ACO1P21399 889 aaKnown RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 COMTP21964 271 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 CD40P25942 277 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 LSP1P33241 339 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 MSX2P35548 267 aaPredicted RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 ZXDAP98168 799 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 HGFACQ04756 655 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 FOXL1Q12952 345 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 MYBPC3Q14896 1274 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 BROXQ5VW32 411 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 UNQ6494/PRO21346Q6UXR6 183 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 Q6ZSN1 163 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 NECAB2Q7Z6G3 386 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 ZZZ3Q8IYH5 903 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 Q8N1X5 172 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 ZNF808Q8N4W9 903 aaPredicted RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 CNTD1Q8N815 330 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 CALML6Q8TD86 181 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 SLC5A5Q92911 643 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 MTMR8Q96EF0 704 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 RPL10LQ96L21 214 aaKnown RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 TUBGCP5Q96RT8 1024 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 FOXB1Q99853 325 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 SCAND2PQ9GZW5 306 aaPredicted RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 MS4A5Q9H3V2 200 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 POFUT1Q9H488 388 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 DDX56Q9NY93 547 aaKnown RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 PUF60Q9UHX1 559 aaKnown RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 DNAI1Q9UI46 699 aa3.32□□□□□ -1.88
PTPRC-208ENST00000427110 NOC2LQ9Y3T9 749 aaKnown RBP3.32□□□□□ -1.88
PTPRC-208ENST00000427110 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 C2orf78A6NCI8 922 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 TGM5O43548 720 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 KDM1AO60341 852 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 FSHBP01225 129 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 S100BP04271 92 aaPredicted RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 PDGFRBP09619 1106 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 C6P13671 934 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 FNTBP49356 437 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 SESN3P58005 492 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 DGCR2P98153 550 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 ATP2C1P98194 919 aaPredicted RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 EXOSC10Q01780 885 aaKnown RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 ROM1Q03395 351 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 MAP3K12Q12852 859 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 RIN1Q13671 783 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 NFYCQ13952 458 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 TERF2Q15554 542 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 BRDTQ58F21 947 aaPredicted RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 TTC38Q5R3I4 469 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 C7orf31Q8N865 590 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 SHCBP1Q8NEM2 672 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 MAML3Q96JK9 1138 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 C16orf92Q96LL3 132 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 MYL10Q9BUA6 226 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 ZNF747Q9BV97 191 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 PUS7LQ9H0K6 701 aaKnown RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 VPS11Q9H270 941 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 SEMA4AQ9H3S1 761 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 TYW1Q9NV66 732 aaKnown RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 HECAQ9UBI9 543 aaPredicted RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 MSRAQ9UJ68 235 aa3.31□□□□□ -1.88
PTPRC-208ENST00000427110 RBM8AQ9Y5S9 174 aaKnown RBP3.31□□□□□ -1.88
PTPRC-208ENST00000427110 PHLDB1Q86UU1 1377 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 WASHC2AQ641Q2 1341 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 WASHC2CQ9Y4E1 1318 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 ST20-MTHFSA0A0A6YYL1 179 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 SLC26A4O43511 780 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 AKAP8O43823 692 aaKnown RBP3.3□□□□□ -1.88
PTPRC-208ENST00000427110 PRKD3O94806 890 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 HNRNPLP14866 589 aaKnown RBP eCLIP3.3□□□□□ -1.88
PTPRC-208ENST00000427110 SMAD3P84022 425 aaKnown RBP3.3□□□□□ -1.88
PTPRC-208ENST00000427110 ADCY1Q08828 1119 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 FAPQ12884 760 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 MTMR1Q13613 665 aa3.3□□□□□ -1.88
PTPRC-208ENST00000427110 PRKD1Q15139 912 aaPredicted RBP3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms