RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 TMEM39BQ9GZU3 492 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ASCC2Q9H1I8 757 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ATXN3LQ9H3M9 355 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 DPH3P1Q9H4G8 78 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 JADE2Q9NQC1 790 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 INTS10Q9NVR2 710 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 DUS2Q9NX74 493 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ANKMY1Q9P2S6 941 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GABRQQ9UN88 632 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CLASP1Q7Z460 1538 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ITPR3Q14573 2671 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ESYT2A0FGR8 921 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 B8ZZF3 427 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PATL2C9JE40 543 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 H3BRB1 525 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 IPO5O00410 1097 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 WNT10BO00744 389 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC9A3R1O14745 358 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 THAP12O43422 761 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PSAPP07602 524 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CEACAM1P13688 526 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GLDCP23378 1020 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PBX2P40425 430 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 AGMOQ6ZNB7 445 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 BTLAQ7Z6A9 289 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 FILIP1Q7Z7B0 1213 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ITIH5Q86UX2 942 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ARHGEF25Q86VW2 580 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PTCD2Q8WV60 388 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TINF2Q9BSI4 451 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 UBAC1Q9BSL1 405 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TEX13BQ9BXU2 312 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 NFKBIZQ9BYH8 718 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TUT1Q9H6E5 874 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 SFXN1Q9H9B4 322 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 FBRSL1Q9HCM7 1045 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PRR12Q9ULL5 1215 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TNFSF13BQ9Y275 285 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 DIDO1Q9BTC0 2240 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CFAP74Q9C0B2 1584 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 UTYO14607 1347 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 BAZ2BQ9UIF8 2168 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 C1QTNF9BB2RNN3 333 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 LRP3O75074 770 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 APBB3O95704 486 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 C1QTNF9P0C862 333 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 TNFRSF8P28908 595 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC5A2P31639 672 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 MAPK9P45984 424 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PLD1Q13393 1074 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 GRM2Q14416 872 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FILIP1LQ4L180 1135 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PABPC1LQ4VXU2 614 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 EOGTQ5NDL2 527 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PODNL1Q6PEZ8 512 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 C14orf80Q86SX3 495 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PDCD6IPQ8WUM4 868 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 JPH3Q8WXH2 748 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 RSPH1Q8WYR4 309 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 NACC1Q96RE7 527 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PPP1R9BQ96SB3 815 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 YIPF4Q9BSR8 244 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ACAD9Q9H845 621 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ASAH2Q9NR71 780 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PRAG1Q86YV5 1406 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 GRID2IPA4D2P6 1211 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM196BA6NMK8 535 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SPDYE16A6NNV3 312 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 FZD9O00144 591 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PDE2AO00408 941 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ERN1O75460 977 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 BCAR3O75815 825 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 HEXAP06865 529 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 CXCR2P25025 360 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 NTSP30990 170 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PXNP49023 591 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 BEX3Q00994 111 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 NNTQ13423 1086 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SERINC3Q13530 473 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PEX6Q13608 980 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SF3A2Q15428 464 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 MLF2Q15773 248 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 EML3Q32P44 896 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF394Q53GI3 561 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SPOCD1Q6ZMY3 1216 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 THEM5Q8N1Q8 247 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 CFAP52Q8N1V2 620 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF496Q96IT1 587 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC30A2Q9BRI3 323 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ADAMTS10Q9H324 1103 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 C8orf33Q9H7E9 229 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 GPN2Q9H9Y4 310 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 ENAMQ9NRM1 1142 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 NRBP2Q9NSY0 501 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PLEKHB1Q9UF11 243 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 DMTF1Q9Y222 760 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 PCDHGA4Q9Y5G9 962 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 MAP3K1Q13233 1512 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 DYTNA2CJ06 578 aa3.04□□□□□ -1.92
CCDC88A-205ENST00000426576 DHX15O43143 795 aaKnown RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms