RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 EIF4EBP3O60516 100 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 VDRP11473 427 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 MYF5P13349 255 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ASPAP45381 313 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 TUBP50607 506 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ZNF543Q08ER8 600 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 MOGSQ13724 837 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 CNGB1Q14028 1251 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 HP1BP3Q5SSJ5 553 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 FKBP15Q5T1M5 1219 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ZKSCAN2Q63HK3 967 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 CWF19L1Q69YN2 538 aaKnown RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 RTN4RL1Q86UN2 441 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 CXorf67Q86X51 503 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 CCDC33Q8N5R6 958 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ESX1Q8N693 406 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 Q96M66 194 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ACAP3Q96P50 834 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 POFUT1Q9H488 388 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 RASSF1Q9NS23 344 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 BTG4Q9NY30 223 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 GGA1Q9UJY5 639 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ADGRL2O95490 1459 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ERBINQ96RT1 1412 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 ZNF644Q9H582 1327 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 MANFP55145 182 aaKnown RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 APBA1Q02410 837 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 NMIQ13287 307 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 STARD3Q14849 445 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 DMRTC2Q8IXT2 367 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 TTLL2Q9BWV7 592 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 SLC12A9Q9BXP2 914 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 MAGEH1Q9H213 219 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 IFT122Q9HBG6 1241 aa5.95□□□□□ -1.46
VPS13A-207ENST00000419472 DCP1AQ9NPI6 582 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-207ENST00000419472 A0A1W2PRQ8 180 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 ANP32CO43423 234 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 HTRA2O43464 458 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 BCL6P41182 706 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 HNRNPMP52272 730 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 TUSC3Q13454 348 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 TMEM132BQ14DG7 1078 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 POLD3Q15054 466 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 ZBTB41Q5SVQ8 909 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 CCDC30Q5VVM6 783 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 KRT77Q7Z794 578 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 TMTC1Q8IUR5 882 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 SH3RF2Q8TEC5 729 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 M0R082 166 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 TPP2P29144 1249 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 GRM1Q13255 1194 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 JMJD6Q6NYC1 403 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 HHIPL2Q6UWX4 724 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 NLRP10Q86W26 655 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 CACNA2D3Q8IZS8 1091 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 MARCH10Q8NA82 808 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 DTWD2Q8NBA8 298 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 ZNF417Q8TAU3 575 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 IPO4Q8TEX9 1081 aaKnown RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 ZNF587Q96SQ5 575 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-207ENST00000419472 DPP7Q9UHL4 492 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 JAG2Q9Y219 1238 aa5.94□□□□□ -1.46
VPS13A-207ENST00000419472 PRDM15P57071 1507 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-207ENST00000419472 DAPK1P53355 1430 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 NPHP3-ACAD11A0A0J9YXS1 232 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 MAN2B1O00754 1011 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 LILRB5O75023 590 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 FGF18O76093 207 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 PAPLNO95428 1278 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 AVPP01185 164 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TSPY4P0CV99 314 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TSPY10P0CW01 314 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 HARSP12081 509 aaKnown RBP5.93□□□□□ -1.46
VPS13A-207ENST00000419472 MX2P20592 715 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 RAB1AP62820 205 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 CDK17Q00537 523 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 UGT8Q16880 541 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 DUOXA2Q1HG44 320 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 WDR45BQ5MNZ6 344 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 NUTM2GQ5VZR2 741 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 SYTL1Q8IYJ3 562 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 OXR1Q8N573 874 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 RNF152Q8N8N0 203 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 KLHDC4Q8TBB5 520 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TSPEARQ8WU66 669 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 SNRNP27Q8WVK2 155 aaKnown RBP5.93□□□□□ -1.46
VPS13A-207ENST00000419472 ZBTB10Q96DT7 871 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 DDX11Q96FC9 970 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TMEM120AQ9BXJ8 343 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 CD244Q9BZW8 370 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TRIT1Q9H3H1 467 aaKnown RBP5.93□□□□□ -1.46
VPS13A-207ENST00000419472 MYO3AQ8NEV4 1616 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 USP19O94966 1318 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 ADAMTS3O15072 1205 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 DYNC1LI2O43237 492 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TIPRLO75663 272 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 CNOT4O95628 575 aaKnown RBP5.93□□□□□ -1.46
VPS13A-207ENST00000419472 TECP42680 631 aa5.93□□□□□ -1.46
VPS13A-207ENST00000419472 SOX4Q06945 474 aaPredicted RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms