RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NME9Q86XW9 330 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 ZCCHC7Q8N3Z6 543 aaKnown RBP9.27□□□□□ -0.93
LIG3-202ENST00000378526 PLEKHA8Q96JA3 519 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 ZFP42Q96MM3 310 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 ANGEL1Q9UNK9 670 aaKnown RBP9.27□□□□□ -0.93
LIG3-202ENST00000378526 MYO1DO94832 1006 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 TNNI1P19237 187 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 GMFBP60983 142 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 PNOCQ13519 176 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 ABRAXAS1Q6UWZ7 409 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 LAYNQ6UX15 382 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 RFX6Q8HWS3 928 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 PM20D2Q8IYS1 436 aa9.27□□□□□ -0.93
LIG3-202ENST00000378526 TRIM66O15016 1216 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 RAD51BO15315 384 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 KLHL41O60662 606 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 TNFAIP8O95379 198 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 NPR2P20594 1047 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 TTKP33981 857 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 MAPKAPK2P49137 400 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 CYB5D1Q6P9G0 228 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 KRT25Q7Z3Z0 450 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 KRT78Q8N1N4 520 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 TTC8Q8TAM2 541 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 MYD88Q99836 296 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 BHMT2Q9H2M3 363 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 NOL6Q9H6R4 1146 aaKnown RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 IMPAD1Q9NX62 359 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 CIDEBQ9UHD4 219 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 SF3B1O75533 1304 aaKnown RBP eCLIP9.26□□□□□ -0.932e-6■■■■■ 116.7
LIG3-202ENST00000378526 EIF4E1BA6NMX2 242 aaKnown RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 SERPING1P05155 500 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 CCT8P50990 548 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 DGUOKQ16854 277 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 EXOC3L4Q17RC7 722 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 KRCC1Q9NPI7 259 aaPredicted RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 TMEM161AQ9NX61 479 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 PYCARDQ9ULZ3 195 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 PLCL2Q9UPR0 1127 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 BTBD3Q9Y2F9 522 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 KANSL1LA0AUZ9 987 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 CCT8L1PA6NM43 557 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ECM2O94769 699 aaPredicted RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 MOCS3O95396 460 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ALOX5P09917 674 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ERCC6Q03468 1493 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 B3GNT6Q6ZMB0 384 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 FAM47EQ6ZV65 393 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 HDHD2Q9H0R4 259 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 EHD1Q9H4M9 534 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 SMARCAL1Q9NZC9 954 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 KLHL3Q9UH77 587 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 TCP11X1B4DZS4 312 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ENC1O14682 589 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 GGPS1O95749 300 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ECDO95905 644 aaPredicted RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 RMND5BQ96G75 393 aaPredicted RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 SEC16BQ96JE7 1060 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 EXOSC4Q9NPD3 245 aaKnown RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 SMARCA2P51531 1590 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ASS1P00966 412 aaKnown RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 MYBL1P10243 752 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ITIH4Q14624 930 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ANKRD44Q8N8A2 993 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 TMIEQ8NEW7 156 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ZNF496Q96IT1 587 aaPredicted RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 GTSE1Q9NYZ3 720 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 VAV3Q9UKW4 847 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 BYSLQ13895 437 aaKnown RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 VPS37AQ8NEZ2 397 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 UBASH3BQ8TF42 649 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 MIEF2Q96C03 454 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ANKRD36BP1Q96IX9 119 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 TEX13BQ9BXU2 312 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 PRDM5Q9NQX1 630 aaPredicted RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 LRCH1Q9Y2L9 728 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 SLFN12LQ6IEE8 588 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 SCYL2Q6P3W7 929 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 SHCBP1Q8NEM2 672 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 ANAPC7Q9UJX3 599 aa9.26□□□□□ -0.93
LIG3-202ENST00000378526 HBS1LQ9Y450 684 aaKnown RBP9.26□□□□□ -0.93
LIG3-202ENST00000378526 NSD3Q9BZ95 1437 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 ANKRD65E5RJM6 399 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 ZPR1O75312 459 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 ZNF806P0C7X5 589 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 ADCY7P51828 1080 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 SLC7A5Q01650 507 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 DARS2Q6PI48 645 aaKnown RBP9.25□□□□□ -0.93
LIG3-202ENST00000378526 TSHZ1Q6ZSZ6 1077 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 S100ZQ8WXG8 99 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 ZNF862O60290 1169 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 ATF4P18848 351 aaPredicted RBP9.25□□□□□ -0.93
LIG3-202ENST00000378526 CDH3P22223 829 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 PLOD1Q02809 727 aaPredicted RBP9.25□□□□□ -0.93
LIG3-202ENST00000378526 EIF2S3LQ2VIR3 472 aaKnown RBP9.25□□□□□ -0.93
LIG3-202ENST00000378526 PMF1Q6P1K2 205 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 RASSF6Q6ZTQ3 369 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 CCDC60Q8IWA6 550 aaPredicted RBP9.25□□□□□ -0.93
LIG3-202ENST00000378526 KCTD6Q8NC69 237 aa9.25□□□□□ -0.93
LIG3-202ENST00000378526 LARP4BQ92615 738 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms