RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TADA3O75528 432 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 TMPRSS15P98073 1019 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 RSBN1LQ6PCB5 846 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 POTEBQ6S5H4 581 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 FAM47EQ6ZV65 393 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 EEPD1Q7L9B9 569 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ISCA1Q9BUE6 129 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 KLC2Q9H0B6 622 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 TAF1DQ9H5J8 278 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 UTYO14607 1347 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 WDR64B1ANS9 1081 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 COPEO14579 308 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 EXOSC10Q01780 885 aaKnown RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 KCNB1Q14721 858 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 NFIXQ14938 502 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 NAALADL2Q58DX5 795 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 TMTC4Q5T4D3 741 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 MIGA2Q7L4E1 593 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 THNSL1Q8IYQ7 743 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 ABI1Q8IZP0 508 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 SYNE4Q8N205 404 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 TTC17Q96AE7 1141 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 CEP95Q96GE4 821 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.23□□□□□ -0.451e-7■■□□□ 12.7
PTPRF-203ENST00000372407 HEMGNQ9BXL5 484 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 EPC1Q9H2F5 836 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 CD209Q9NNX6 404 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 TBC1D22BQ9NU19 505 aa12.23□□□□□ -0.45
PTPRF-203ENST00000372407 G3BP2Q9UN86 482 aaKnown RBP12.23□□□□□ -0.45
PTPRF-203ENST00000372407 TYW5A2RUC4 315 aaKnown RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 FOXN1O15353 648 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CHRNA3P32297 505 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PRELPP51888 382 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 RNF207Q6ZRF8 634 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 TTC25Q96NG3 672 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 SLITRK6Q9H5Y7 841 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 A0A0G2JND7 137 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CLDN3O15551 220 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 NMT2O60551 498 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 HSPA8P11142 646 aaKnown RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 ZNF18P17022 549 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PPP2R2AP63151 447 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 SPATA4Q8NEY3 305 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CCDC138Q96M89 665 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 NLRP4Q96MN2 994 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 TTC1Q99614 292 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 AP5M1Q9H0R1 490 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 ZWILCHQ9H900 591 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PPARGC1AQ9UBK2 798 aaKnown RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CAPN11Q9UMQ6 739 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 FAM187AA6NFU0 413 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 GNGT2O14610 69 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CFLARO15519 480 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PFDN1O60925 122 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PHEXP78562 749 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 DRAP1Q14919 205 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 ZNF394Q53GI3 561 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 N4BP2L2Q92802 583 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CFAP36Q96G28 342 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 WDR24Q96S15 920 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 HDAC6Q9UBN7 1215 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 ITSN1Q15811 1721 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PP2D1A8MPX8 630 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 GYG2O15488 501 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 BRAFP15056 766 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 CASP2P42575 452 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 NKX1-1Q15270 411 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 GRAMD1BQ3KR37 738 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 PPP6R3Q5H9R7 873 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 STOX1Q6ZVD7 989 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 METTL16Q86W50 562 aaKnown RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 GSPT2Q8IYD1 628 aaKnown RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 DEPDC1BQ8WUY9 529 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 FAF2Q96CS3 445 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 RMDN3Q96TC7 470 aa12.22□□□□□ -0.45
PTPRF-203ENST00000372407 UPF3AQ9H1J1 476 aaKnown RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 MAGED2Q9UNF1 606 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-203ENST00000372407 ORC4O43929 436 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 TRPA1O75762 1119 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 PMS2P54278 862 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 MTMR1Q13613 665 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 TRAIPQ9BWF2 469 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 ZNF341Q9BYN7 854 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 CCSER1Q9C0I3 900 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 WDR70Q9NW82 654 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 LCMT1Q9UIC8 334 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 KIF28PB7ZC32 967 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 ZBTB24O43167 697 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-203ENST00000372407 SNAP25P60880 206 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 KRT76Q01546 638 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 ARL13BQ3SXY8 428 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 RCSD1Q6JBY9 416 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 LRRC43Q8N309 656 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 NEDD1Q8NHV4 660 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 C11orf70Q9BRQ4 267 aa12.21□□□□□ -0.45
PTPRF-203ENST00000372407 LMNAP02545 664 aaKnown RBP12.21□□□□□ -0.46
PTPRF-203ENST00000372407 FTLP02792 175 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-203ENST00000372407 CALB1P05937 261 aa12.21□□□□□ -0.46
PTPRF-203ENST00000372407 OSBPP22059 807 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms