RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 VCAM1P19320 739 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 CARSP49589 748 aaKnown RBP21.06■□□□□ 0.96
COL9A3-201ENST00000343916 GUCY2DQ02846 1103 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 PHLDB3Q6NSJ2 640 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 SLC16A10Q8TF71 515 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 WNK4Q96J92 1243 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 KIAA1683Q9H0B3 1180 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 EPB41L5Q9HCM4 733 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 APEX2Q9UBZ4 518 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 FER1L6Q2WGJ9 1857 aa21.06■□□□□ 0.96
COL9A3-201ENST00000343916 YWHABP31946 246 aaKnown RBP21.05■□□□□ 0.96
COL9A3-201ENST00000343916 QARSP47897 775 aaKnown RBP21.05■□□□□ 0.96
COL9A3-201ENST00000343916 EPHB4P54760 987 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 GALCP54803 685 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 PGM5Q15124 567 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 PPP2R5AQ15172 486 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 TRADDQ15628 312 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 KLHL7Q8IXQ5 586 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 USP38Q8NB14 1042 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 TSEN2Q8NCE0 465 aaKnown RBP21.05■□□□□ 0.96
COL9A3-201ENST00000343916 OSGEPQ9NPF4 335 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 FEZ2Q9UHY8 353 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-201ENST00000343916 SAMD7Q7Z3H4 446 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 IFT81Q8WYA0 676 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 JDP2Q8WYK2 163 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 RUBCNQ92622 972 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 NFU1Q9UMS0 254 aa21.05■□□□□ 0.96
COL9A3-201ENST00000343916 CEP104O60308 925 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 ABCB4P21439 1286 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 GLE1Q53GS7 698 aaKnown RBP21.04■□□□□ 0.96
COL9A3-201ENST00000343916 NSMFQ6X4W1 530 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 SLC30A5Q8TAD4 765 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 GOLGA5Q8TBA6 731 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 VPS33BQ9H267 617 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 LCMT1Q9UIC8 334 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 PLA2G4FQ68DD2 849 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 DAAM2Q86T65 1068 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 PALB2Q86YC2 1186 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 SLC9A9Q8IVB4 645 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 METTL13Q8N6R0 699 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 RMDN3Q96TC7 470 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 RPAP3Q9H6T3 665 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-201ENST00000343916 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.04■□□□□ 0.96
COL9A3-201ENST00000343916 SEPT11Q9NVA2 429 aaKnown RBP21.04■□□□□ 0.96
COL9A3-201ENST00000343916 FZD1Q9UP38 647 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 EMSYQ7Z589 1322 aa21.04■□□□□ 0.96
COL9A3-201ENST00000343916 TESPA1A2RU30 521 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-201ENST00000343916 BACH1O14867 736 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 ZBTB7AO95365 584 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 FAM153BP0C7A2 387 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 NPEPPSP55786 919 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 IFI16Q16666 785 aaKnown RBP21.03■□□□□ 0.96
COL9A3-201ENST00000343916 FAM153CQ494X1 144 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 NIPA1Q7RTP0 329 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 PEX26Q7Z412 305 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 PROCA1Q8NCQ7 364 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-201ENST00000343916 LMO3Q8TAP4 145 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 CCDC43Q96MW1 224 aaKnown RBP21.03■□□□□ 0.96
COL9A3-201ENST00000343916 PIM2Q9P1W9 311 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 FAM153AQ9UHL3 310 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 PPP1R9AQ9ULJ8 1098 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 RAD51CO43502 376 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 PLS3P13797 630 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 PPP3CAQ08209 521 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 AP1M1Q9BXS5 423 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 TAOK3Q9H2K8 898 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 GDF3Q9NR23 364 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 TAS2R14Q9NYV8 317 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 DBR1Q9UK59 544 aaKnown RBP21.03■□□□□ 0.96
COL9A3-201ENST00000343916 RIPK3Q9Y572 518 aa21.03■□□□□ 0.96
COL9A3-201ENST00000343916 FOXN3O00409 490 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-201ENST00000343916 SLC16A4O15374 487 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 CCNE2O96020 404 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 ANXA13P27216 316 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 GCLMP48507 274 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 PEX3P56589 373 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 EMBQ6PCB8 327 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 HAUS6Q7Z4H7 955 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 IFT20Q8IY31 132 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 CTDP1Q9Y5B0 961 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-201ENST00000343916 IGSF9BQ9UPX0 1349 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 KRT13P13646 458 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 ACTN2P35609 894 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 RNF207Q6ZRF8 634 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 LOXHD1Q8IVV2 1947 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 AFAP1L1Q8TED9 768 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 SYT11Q9BT88 431 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 TMEM206Q9H813 350 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 TMEM59LQ9UK28 342 aa21.02■□□□□ 0.96
COL9A3-201ENST00000343916 ZBTB48P10074 688 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-201ENST00000343916 TNFRSF8P28908 595 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 VAMP7P51809 220 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 GHRHRQ02643 423 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 TNFAIP1Q13829 316 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 NBPF12Q5TAG4 269 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-201ENST00000343916 SLC35G2Q8TBE7 412 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 PLEKHO2Q8TD55 490 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 ATG4CQ96DT6 458 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 ACCSQ96QU6 501 aa21.01■□□□□ 0.95
COL9A3-201ENST00000343916 PDCD2LQ9BRP1 358 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms