RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SRPK1Q96SB4 655 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 KIFC3Q9BVG8 833 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 FARP1Q9Y4F1 1045 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 PCDHA13Q9Y5I0 950 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 SETD1BQ9UPS6 1966 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 PQBP1O60828 265 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 TRPA1O75762 1119 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 INPP1P49441 399 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 STX1BP61266 288 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 RUFY4Q6ZNE9 571 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 MIPOL1Q8TD10 442 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 WHAMMQ8TF30 809 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 MAP3K20Q9NYL2 800 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ADAMTS1Q9UHI8 967 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 GNA15P30679 374 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 DBN1Q16643 649 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 LRRC31Q6UY01 552 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ERO1AQ96HE7 468 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 RAB3IPQ96QF0 476 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 TOPORSQ9NS56 1045 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 NEO1Q92859 1461 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 VTNP04004 478 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 EFCAB12Q6NXP0 572 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 ENAHQ8N8S7 591 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 CNOT8Q9UFF9 292 aaKnown RBP8.35□□□□□ -1.07
SCN9A-201ENST00000303354 PYCARDQ9ULZ3 195 aa8.35□□□□□ -1.07
SCN9A-201ENST00000303354 LIG3P49916 1009 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 ITPK1Q13572 414 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 LRRC8AQ8IWT6 810 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 TTC17Q96AE7 1141 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 ADAM22Q9P0K1 906 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SLC13A4Q9UKG4 626 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 KRT10P13645 584 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 YWHABP31946 246 aaKnown RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 ATP11CQ8NB49 1132 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 RBAKQ9NYW8 714 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 NCK2O43639 380 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 BPIFB4P59827 614 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 OCRLQ01968 901 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 EFCAB13Q8IY85 973 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 GSPT2Q8IYD1 628 aaKnown RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 ACSF2Q96CM8 615 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SLC13A1Q9BZW2 595 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 RNF40O75150 1001 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SPAG7O75391 227 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 PRKCBP05771 671 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 HS6ST3Q8IZP7 471 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 NDUFAF2Q8N183 169 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SIX5Q8N196 739 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 EFHBQ8N7U6 833 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 FAM49BQ9NUQ9 324 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 TJP2Q9UDY2 1190 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 PASKQ96RG2 1323 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 NPTXRO95502 500 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 PSMC1P62191 440 aaKnown RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 MDH1BQ5I0G3 518 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 NCLNQ969V3 563 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 ZNF512Q96ME7 567 aaPredicted RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 TAAR1Q96RJ0 339 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 KLF15Q9UIH9 416 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 JAK3P52333 1124 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 FCGRTP55899 365 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SLC15A2Q16348 729 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SLC17A8Q8NDX2 589 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 SH3TC2Q8TF17 1288 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 STAG1Q8WVM7 1258 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 MAML1Q92585 1016 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 BRIP1Q9BX63 1249 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 IMPACTQ9P2X3 320 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 TRIM17Q9Y577 477 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 ADM5C9JUS6 153 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 BRD1O95696 1058 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 RPSAP08865 295 aaKnown RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 EPHX2P34913 555 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 MAN2A1Q16706 1144 aa8.34□□□□□ -1.07
SCN9A-201ENST00000303354 MRPL4Q9BYD3 311 aaKnown RBP8.34□□□□□ -1.07
SCN9A-201ENST00000303354 FOXN1O15353 648 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 QARSP47897 775 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 FOXO4P98177 505 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 FAM102AQ5T9C2 384 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 CPA5Q8WXQ8 436 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RABGGTAQ92696 567 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 NUDT12Q9BQG2 462 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ABI2Q9NYB9 513 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 SH3BP1Q9Y3L3 701 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 INPP5BP32019 993 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 VAMP7P51809 220 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ST8SIA6P61647 398 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 COG2Q14746 738 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 YME1L1Q96TA2 773 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 PPP3CCP48454 512 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RASSF3Q86WH2 238 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RSRC1Q96IZ7 334 aaKnown RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 GLIS2Q9BZE0 524 aaPredicted RBP8.33□□□□□ -1.08
SCN9A-201ENST00000303354 SAYSD1Q9NPB0 183 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 MT-ND3P03897 115 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 EPB42P16452 691 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 RFX3P48380 749 aa8.33□□□□□ -1.08
SCN9A-201ENST00000303354 TNFAIP2Q03169 654 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms