RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 DRC1Q96MC2 740 aa18.41■□□□□ 0.54
CPSF4-201ENST00000292476 NOC4LQ9BVI4 516 aaKnown RBP18.41■□□□□ 0.54
CPSF4-201ENST00000292476 TSGA10Q9BZW7 698 aa18.41■□□□□ 0.54
CPSF4-201ENST00000292476 GBP3Q9H0R5 595 aa18.41■□□□□ 0.54
CPSF4-201ENST00000292476 MYO6Q9UM54 1294 aa18.41■□□□□ 0.54
CPSF4-201ENST00000292476 PTPN22Q9Y2R2 807 aa18.41■□□□□ 0.54
CPSF4-201ENST00000292476 UBE4BO95155 1302 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 BACH1O14867 736 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 MAPTP10636 758 aaKnown RBP18.4■□□□□ 0.54
CPSF4-201ENST00000292476 UBA1P22314 1058 aaKnown RBP18.4■□□□□ 0.54
CPSF4-201ENST00000292476 FKBP3Q00688 224 aaKnown RBP18.4■□□□□ 0.54
CPSF4-201ENST00000292476 CACNB1Q02641 598 aaPredicted RBP18.4■□□□□ 0.54
CPSF4-201ENST00000292476 TTLL4Q14679 1199 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 ZNF792Q3KQV3 632 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 FAM160B1Q5W0V3 765 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 SWSAP1Q6NVH7 229 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 GPR142Q7Z601 462 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 SFR1Q86XK3 245 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 RPGRIP1Q96KN7 1286 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 EDEM3Q9BZQ6 932 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 SEMA6BQ9H3T3 888 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 MLXIPQ9HAP2 919 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 HTTP42858 3142 aa18.4■□□□□ 0.54
CPSF4-201ENST00000292476 KIAA1217Q5T5P2 1943 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 ANO9A1A5B4 782 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 SLC15A5A6NIM6 579 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 GNA14O95837 355 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 MAN2A1Q16706 1144 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 BMT2Q1RMZ1 405 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 EDRF1Q3B7T1 1238 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 XKR9Q5GH70 373 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 XKR3Q5GH77 459 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 TRAPPC11Q7Z392 1133 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 DPP9Q86TI2 863 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 SCFD2Q8WU76 684 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 SEPT1Q8WYJ6 367 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 FGD4Q96M96 766 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 CEP63Q96MT8 703 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 ANKZF1Q9H8Y5 726 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 VTA1Q9NP79 307 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 ZNF302Q9NR11 478 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 PCDHB13Q9Y5F0 798 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 PTCH2Q9Y6C5 1203 aa18.39■□□□□ 0.53
CPSF4-201ENST00000292476 DOCK3Q8IZD9 2030 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 TNPO2O14787 897 aaKnown RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 ZBTB39O15060 712 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 CALUO43852 315 aaPredicted RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 FARP2O94887 1054 aaPredicted RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 SP2Q02086 613 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 GRB14Q14449 540 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 KNOP1Q1ED39 458 aaKnown RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 VWA3BQ502W6 1294 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 PAPD7Q5XG87 772 aaKnown RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 EPM2AIP1Q7L775 607 aaPredicted RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 FAM178BQ8IXR5 827 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 SCFD1Q8WVM8 642 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 FUT8Q9BYC5 575 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 C17orf75Q9HAS0 396 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 TBC1D7Q9P0N9 293 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 PPME1Q9Y570 386 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 IGSF9BQ9UPX0 1349 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 CCDC85CA6NKD9 419 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 PDXKO00764 312 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 GCNT3O95395 438 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 ABCD1P33897 745 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 LRRC41Q15345 812 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 UGCGQ16739 394 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 ODR4Q5SWX8 454 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 MCPH1Q8NEM0 835 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 SRRDQ9UH36 339 aa18.38■□□□□ 0.53
CPSF4-201ENST00000292476 MAFBQ9Y5Q3 323 aaPredicted RBP18.38■□□□□ 0.53
CPSF4-201ENST00000292476 SYNGAP1Q96PV0 1343 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 IGKV6D-21A0A0A0MT36 114 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 MAP2K7O14733 419 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 HIP1RO75146 1068 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 DGAT1O75907 488 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 SEC31AO94979 1220 aaKnown RBP18.37■□□□□ 0.53
CPSF4-201ENST00000292476 GGPS1O95749 300 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 GNRH1P01148 92 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 MCM3P25205 808 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 RPL13P26373 211 aaKnown RBP18.37■□□□□ 0.53
CPSF4-201ENST00000292476 SP4Q02446 784 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 PRKCZQ05513 592 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 LONRF2Q1L5Z9 754 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 CELF3Q5SZQ8 465 aaKnown RBP18.37■□□□□ 0.53
CPSF4-201ENST00000292476 CCDC122Q5T0U0 273 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 MAMDC4Q6UXC1 1216 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 ARMCX2Q7L311 632 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 ZNF771Q7L3S4 317 aaPredicted RBP18.37■□□□□ 0.53
CPSF4-201ENST00000292476 KIAA1328Q86T90 577 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 JAKMIP2Q96AA8 810 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 CEP170P1Q96L14 293 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 AZI2Q9H6S1 392 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 NHEJ1Q9H9Q4 299 aaPredicted RBP18.37■□□□□ 0.53
CPSF4-201ENST00000292476 NRBP2Q9NSY0 501 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 PUF60Q9UHX1 559 aaKnown RBP18.37■□□□□ 0.53
CPSF4-201ENST00000292476 GABRQQ9UN88 632 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 PLAGL2Q9UPG8 496 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 TRAF3IP3Q9Y228 551 aa18.37■□□□□ 0.53
CPSF4-201ENST00000292476 SIK3Q9Y2K2 1263 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms