RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 HNRNPMP52272 730 aaKnown RBP eCLIP26.25■■□□□ 1.794e-8■■■□□ 17.4
PHGDH-234ENST00000642041 VWDEQ8N2E2 1590 aa26.24■■□□□ 1.79
PHGDH-234ENST00000642041 SYCP2Q9BX26 1530 aa26.24■■□□□ 1.79
PHGDH-234ENST00000642041 ANKLE2Q86XL3 938 aa26.23■■□□□ 1.79
PHGDH-234ENST00000642041 CCDC18Q5T9S5 1454 aa26.2■■□□□ 1.78
PHGDH-234ENST00000642041 SENP3Q9H4L4 574 aaPredicted RBP26.19■■□□□ 1.78
PHGDH-234ENST00000642041 KIAA1107Q9UPP5 1409 aa26.19■■□□□ 1.78
PHGDH-234ENST00000642041 INO80Q9ULG1 1556 aaPredicted RBP26.19■■□□□ 1.78
PHGDH-234ENST00000642041 TNRQ92752 1358 aa26.18■■□□□ 1.78
PHGDH-234ENST00000642041 THEMISQ8N1K5 641 aaPredicted RBP26.15■■□□□ 1.78
PHGDH-234ENST00000642041 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.15■■□□□ 1.78
PHGDH-234ENST00000642041 MED14O60244 1454 aa26.15■■□□□ 1.78
PHGDH-234ENST00000642041 NPHP4O75161 1426 aaPredicted RBP26.14■■□□□ 1.78
PHGDH-234ENST00000642041 FBXO31Q5XUX0 539 aaPredicted RBP26.14■■□□□ 1.78
PHGDH-234ENST00000642041 TIAM1Q13009 1591 aa26.14■■□□□ 1.78
PHGDH-234ENST00000642041 GPATCH8Q9UKJ3 1502 aaKnown RBP26.14■■□□□ 1.77
PHGDH-234ENST00000642041 PLEKHH2Q8IVE3 1493 aa26.13■■□□□ 1.77
PHGDH-234ENST00000642041 LRRC7Q96NW7 1537 aa26.11■■□□□ 1.77
PHGDH-234ENST00000642041 DEPDC5O75140 1603 aa26.1■■□□□ 1.77
PHGDH-234ENST00000642041 ADGBQ8N7X0 1667 aa26.1■■□□□ 1.77
PHGDH-234ENST00000642041 RNF17Q9BXT8 1623 aaKnown RBP26.08■■□□□ 1.77
PHGDH-234ENST00000642041 PZPP20742 1482 aa26.08■■□□□ 1.77
PHGDH-234ENST00000642041 POTEAQ6S8J7 498 aa26.07■■□□□ 1.76
PHGDH-234ENST00000642041 CFDP1Q9UEE9 299 aaPredicted RBP26.07■■□□□ 1.76
PHGDH-234ENST00000642041 STRCP1A6NGW2 1772 aa26.05■■□□□ 1.76
PHGDH-234ENST00000642041 NLRP1Q9C000 1473 aa26.04■■□□□ 1.76
PHGDH-234ENST00000642041 FAM135AQ9P2D6 1515 aa26.04■■□□□ 1.76
PHGDH-234ENST00000642041 UGGT1Q9NYU2 1555 aa26.04■■□□□ 1.76
PHGDH-234ENST00000642041 MIA2Q96PC5 1412 aa26.04■■□□□ 1.76
PHGDH-234ENST00000642041 IQGAP1P46940 1657 aa26.03■■□□□ 1.76
PHGDH-234ENST00000642041 DHX29Q7Z478 1369 aaKnown RBP26.03■■□□□ 1.76
PHGDH-234ENST00000642041 SYNMO15061 1565 aa26.03■■□□□ 1.76
PHGDH-234ENST00000642041 EHBP1L1Q8N3D4 1523 aa25.99■■□□□ 1.75
PHGDH-234ENST00000642041 KDM5DQ9BY66 1539 aa25.98■■□□□ 1.75
PHGDH-234ENST00000642041 LRRC9Q6ZRR7 1453 aa25.98■■□□□ 1.75
PHGDH-234ENST00000642041 RTEL1-TNFRSF6BF6WH68 1400 aa25.97■■□□□ 1.75
PHGDH-234ENST00000642041 KIF3BO15066 747 aa25.97■■□□□ 1.75
PHGDH-234ENST00000642041 CCNB3Q8WWL7 1395 aa25.96■■□□□ 1.75
PHGDH-234ENST00000642041 WASHC2CQ9Y4E1 1318 aa25.96■■□□□ 1.75
PHGDH-234ENST00000642041 MTUS2Q5JR59 1369 aa25.95■■□□□ 1.75
PHGDH-234ENST00000642041 PPARGC1BQ86YN6 1023 aaKnown RBP25.93■■□□□ 1.74
PHGDH-234ENST00000642041 FAM135BQ49AJ0 1406 aa25.92■■□□□ 1.74
PHGDH-234ENST00000642041 MBD5Q9P267 1494 aa25.91■■□□□ 1.74
PHGDH-234ENST00000642041 ZNF644Q9H582 1327 aaPredicted RBP25.89■■□□□ 1.74
PHGDH-234ENST00000642041 ZEB1P37275 1124 aaPredicted RBP25.89■■□□□ 1.74
PHGDH-234ENST00000642041 KANK4Q5T7N3 995 aaPredicted RBP25.86■■□□□ 1.73
PHGDH-234ENST00000642041 ZC3H13Q5T200 1668 aaKnown RBP25.86■■□□□ 1.73
PHGDH-234ENST00000642041 SETD1AO15047 1707 aaKnown RBP25.83■■□□□ 1.73
PHGDH-234ENST00000642041 XIRP1Q702N8 1843 aaKnown RBP25.83■■□□□ 1.73
PHGDH-234ENST00000642041 RRBP1Q9P2E9 1410 aaKnown RBP25.8■■□□□ 1.72
PHGDH-234ENST00000642041 SCAF11Q99590 1463 aaKnown RBP25.79■■□□□ 1.72
PHGDH-234ENST00000642041 NCOA2Q15596 1464 aa25.77■■□□□ 1.72
PHGDH-234ENST00000642041 HRCP23327 699 aa25.76■■□□□ 1.71
PHGDH-234ENST00000642041 UPF1Q92900 1129 aaKnown RBP eCLIP25.76■■□□□ 1.71
PHGDH-234ENST00000642041 LTKP29376 864 aa25.74■■□□□ 1.71
PHGDH-234ENST00000642041 CCDC141Q6ZP82 1450 aa25.73■■□□□ 1.71
PHGDH-234ENST00000642041 RSPH4AQ5TD94 716 aa25.73■■□□□ 1.71
PHGDH-234ENST00000642041 TXNDC2Q86VQ3 553 aa25.73■■□□□ 1.71
PHGDH-234ENST00000642041 ERVK-7P63135 1459 aa25.72■■□□□ 1.71
PHGDH-234ENST00000642041 UBR1Q8IWV7 1749 aa25.71■■□□□ 1.71
PHGDH-234ENST00000642041 ROBO1Q9Y6N7 1651 aa25.71■■□□□ 1.71
PHGDH-234ENST00000642041 ARHGAP23Q9P227 1491 aa25.71■■□□□ 1.71
PHGDH-234ENST00000642041 TMEM94Q12767 1356 aa25.69■■□□□ 1.7
PHGDH-234ENST00000642041 SLIT1O75093 1534 aa25.69■■□□□ 1.7
PHGDH-234ENST00000642041 ABCC3O15438 1527 aa25.68■■□□□ 1.7
PHGDH-234ENST00000642041 MYOM3Q5VTT5 1437 aa25.66■■□□□ 1.7
PHGDH-234ENST00000642041 EID1Q9Y6B2 187 aa25.66■■□□□ 1.7
PHGDH-234ENST00000642041 JCADQ9P266 1359 aa25.66■■□□□ 1.7
PHGDH-234ENST00000642041 SRCAPQ6ZRS2 3230 aa25.65■■□□□ 1.7
PHGDH-234ENST00000642041 KCNA6P17658 529 aa25.62■■□□□ 1.69
PHGDH-234ENST00000642041 CFAP65Q6ZU64 1925 aaKnown RBP25.61■■□□□ 1.69
PHGDH-234ENST00000642041 TSPY4P0CV99 314 aa25.61■■□□□ 1.69
PHGDH-234ENST00000642041 TSPY10P0CW01 314 aa25.61■■□□□ 1.69
PHGDH-234ENST00000642041 PROSER2Q86WR7 435 aaPredicted RBP25.6■■□□□ 1.69
PHGDH-234ENST00000642041 ZNF772Q68DY9 489 aaPredicted RBP25.59■■□□□ 1.69
PHGDH-234ENST00000642041 FGD6Q6ZV73 1430 aa25.59■■□□□ 1.69
PHGDH-234ENST00000642041 CAMSAP2Q08AD1 1489 aa25.59■■□□□ 1.69
PHGDH-234ENST00000642041 TRIM52Q96A61 297 aa25.58■■□□□ 1.69
PHGDH-234ENST00000642041 PHLPP1O60346 1717 aa25.57■■□□□ 1.68
PHGDH-234ENST00000642041 RBM33Q96EV2 1170 aaKnown RBP25.55■■□□□ 1.68
PHGDH-234ENST00000642041 SLAIN2Q9P270 581 aa25.55■■□□□ 1.68
PHGDH-234ENST00000642041 TMEM2Q9UHN6 1383 aa25.55■■□□□ 1.68
PHGDH-234ENST00000642041 ARHGEF5Q12774 1597 aa25.54■■□□□ 1.68
PHGDH-234ENST00000642041 SPATA31A6Q5VVP1 1343 aa25.53■■□□□ 1.68
PHGDH-234ENST00000642041 ACIN1Q9UKV3 1341 aaKnown RBP25.53■■□□□ 1.68
PHGDH-234ENST00000642041 PRDM15P57071 1507 aaPredicted RBP25.53■■□□□ 1.68
PHGDH-234ENST00000642041 MSH6P52701 1360 aa25.52■■□□□ 1.68
PHGDH-234ENST00000642041 MROH1Q8NDA8 1641 aa25.51■■□□□ 1.67
PHGDH-234ENST00000642041 PTPN23Q9H3S7 1636 aa25.51■■□□□ 1.67
PHGDH-234ENST00000642041 EIF2AK4Q9P2K8 1649 aaKnown RBP25.51■■□□□ 1.67
PHGDH-234ENST00000642041 LRP6O75581 1613 aa25.5■■□□□ 1.67
PHGDH-234ENST00000642041 CEP152O94986 1710 aa25.5■■□□□ 1.67
PHGDH-234ENST00000642041 MEX3CQ5U5Q3 659 aaKnown RBP25.5■■□□□ 1.67
PHGDH-234ENST00000642041 ARHGAP31Q2M1Z3 1444 aa25.49■■□□□ 1.67
PHGDH-234ENST00000642041 RXRBP28702 533 aa25.49■■□□□ 1.67
PHGDH-234ENST00000642041 NKTRP30414 1462 aaKnown RBP25.48■■□□□ 1.67
PHGDH-234ENST00000642041 SLC26A8Q96RN1 970 aa25.47■■□□□ 1.67
PHGDH-234ENST00000642041 TET3O43151 1660 aa25.47■■□□□ 1.67
PHGDH-234ENST00000642041 COL16A1Q07092 1604 aaPredicted RBP25.47■■□□□ 1.67
PHGDH-234ENST00000642041 CCER1Q8TC90 406 aaPredicted RBP25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms