RNA–Protein interactions for RNA: ENST00000641899.1

SRRM4-204, Transcript of serine/arginine repetitive matrix 4, humanhuman

Gene SRRM4, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4-204ENST00000641899 THEMISQ8N1K5 641 aaPredicted RBP24.23■■□□□ 1.47
SRRM4-204ENST00000641899 KIF3BO15066 747 aa24.22■■□□□ 1.47
SRRM4-204ENST00000641899 WASHC2CQ9Y4E1 1318 aa24.21■■□□□ 1.47
SRRM4-204ENST00000641899 FAM135AQ9P2D6 1515 aa24.2■■□□□ 1.47
SRRM4-204ENST00000641899 HSPA1LP34931 641 aa24.2■■□□□ 1.46
SRRM4-204ENST00000641899 ZNF644Q9H582 1327 aaPredicted RBP24.19■■□□□ 1.46
SRRM4-204ENST00000641899 DNMT1P26358 1616 aaKnown RBP24.19■■□□□ 1.46
SRRM4-204ENST00000641899 MBD5Q9P267 1494 aa24.19■■□□□ 1.46
SRRM4-204ENST00000641899 SHANK2Q9UPX8 1470 aa24.18■■□□□ 1.46
SRRM4-204ENST00000641899 EHBP1L1Q8N3D4 1523 aa24.16■■□□□ 1.46
SRRM4-204ENST00000641899 PZPP20742 1482 aa24.16■■□□□ 1.46
SRRM4-204ENST00000641899 KDM5DQ9BY66 1539 aa24.15■■□□□ 1.46
SRRM4-204ENST00000641899 FBXO31Q5XUX0 539 aaPredicted RBP24.15■■□□□ 1.46
SRRM4-204ENST00000641899 PHF23Q9BUL5 403 aaPredicted RBP24.15■■□□□ 1.46
SRRM4-204ENST00000641899 CEP162Q5TB80 1403 aa24.15■■□□□ 1.46
SRRM4-204ENST00000641899 CCDC141Q6ZP82 1450 aa24.13■■□□□ 1.45
SRRM4-204ENST00000641899 NLRP1Q9C000 1473 aa24.13■■□□□ 1.45
SRRM4-204ENST00000641899 TSPY4P0CV99 314 aa24.13■■□□□ 1.45
SRRM4-204ENST00000641899 TSPY10P0CW01 314 aa24.13■■□□□ 1.45
SRRM4-204ENST00000641899 TIAM1Q13009 1591 aa24.12■■□□□ 1.45
SRRM4-204ENST00000641899 MIA2Q96PC5 1412 aa24.11■■□□□ 1.45
SRRM4-204ENST00000641899 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.11■■□□□ 1.45
SRRM4-204ENST00000641899 NPHP4O75161 1426 aaPredicted RBP24.09■■□□□ 1.45
SRRM4-204ENST00000641899 MED1Q15648 1581 aaPredicted RBP24.08■■□□□ 1.45
SRRM4-204ENST00000641899 POLR1AO95602 1720 aaPredicted RBP24.07■■□□□ 1.44
SRRM4-204ENST00000641899 UGGT1Q9NYU2 1555 aa24.07■■□□□ 1.44
SRRM4-204ENST00000641899 NEURL4Q96JN8 1562 aa24.06■■□□□ 1.44
SRRM4-204ENST00000641899 MED14O60244 1454 aa24.05■■□□□ 1.44
SRRM4-204ENST00000641899 CAMSAP2Q08AD1 1489 aa24.02■■□□□ 1.44
SRRM4-204ENST00000641899 DEPDC5O75140 1603 aa24.01■■□□□ 1.43
SRRM4-204ENST00000641899 NCOA2Q15596 1464 aa24■■□□□ 1.43
SRRM4-204ENST00000641899 VWDEQ8N2E2 1590 aa23.99■■□□□ 1.43
SRRM4-204ENST00000641899 ARHGEF5Q12774 1597 aa23.94■■□□□ 1.42
SRRM4-204ENST00000641899 IQGAP1P46940 1657 aa23.92■■□□□ 1.42
SRRM4-204ENST00000641899 LRRC7Q96NW7 1537 aa23.89■■□□□ 1.42
SRRM4-204ENST00000641899 SENP3Q9H4L4 574 aaPredicted RBP23.89■■□□□ 1.41
SRRM4-204ENST00000641899 EID1Q9Y6B2 187 aa23.89■■□□□ 1.41
SRRM4-204ENST00000641899 SYNMO15061 1565 aa23.89■■□□□ 1.41
SRRM4-204ENST00000641899 ABCC3O15438 1527 aa23.89■■□□□ 1.41
SRRM4-204ENST00000641899 ZC3H13Q5T200 1668 aaKnown RBP23.89■■□□□ 1.41
SRRM4-204ENST00000641899 ERVK-7P63135 1459 aa23.87■■□□□ 1.41
SRRM4-204ENST00000641899 RNF17Q9BXT8 1623 aaKnown RBP23.87■■□□□ 1.41
SRRM4-204ENST00000641899 SCAF11Q99590 1463 aaKnown RBP23.86■■□□□ 1.41
SRRM4-204ENST00000641899 TXNDC2Q86VQ3 553 aa23.85■■□□□ 1.41
SRRM4-204ENST00000641899 EIF2AK4Q9P2K8 1649 aaKnown RBP23.82■■□□□ 1.4
SRRM4-204ENST00000641899 ALKQ9UM73 1620 aa23.82■■□□□ 1.4
SRRM4-204ENST00000641899 STAG3Q9UJ98 1225 aa23.82■■□□□ 1.4
SRRM4-204ENST00000641899 MAST1Q9Y2H9 1570 aa23.82■■□□□ 1.4
SRRM4-204ENST00000641899 MYOM3Q5VTT5 1437 aa23.78■■□□□ 1.4
SRRM4-204ENST00000641899 LRRC9Q6ZRR7 1453 aa23.78■■□□□ 1.4
SRRM4-204ENST00000641899 DUOX2Q9NRD8 1548 aa23.77■■□□□ 1.4
SRRM4-204ENST00000641899 ARHGAP31Q2M1Z3 1444 aa23.76■■□□□ 1.39
SRRM4-204ENST00000641899 SLIT1O75093 1534 aa23.75■■□□□ 1.39
SRRM4-204ENST00000641899 LTKP29376 864 aa23.75■■□□□ 1.39
SRRM4-204ENST00000641899 KANK1Q14678 1352 aa23.75■■□□□ 1.39
SRRM4-204ENST00000641899 ARHGAP23Q9P227 1491 aa23.75■■□□□ 1.39
SRRM4-204ENST00000641899 FAM135BQ49AJ0 1406 aa23.73■■□□□ 1.39
SRRM4-204ENST00000641899 VPS8Q8N3P4 1428 aa23.72■■□□□ 1.39
SRRM4-204ENST00000641899 UBR1Q8IWV7 1749 aa23.72■■□□□ 1.39
SRRM4-204ENST00000641899 ERBINQ96RT1 1412 aa23.71■■□□□ 1.39
SRRM4-204ENST00000641899 KIF15Q9NS87 1388 aa23.71■■□□□ 1.39
SRRM4-204ENST00000641899 TMEM2Q9UHN6 1383 aa23.71■■□□□ 1.39
SRRM4-204ENST00000641899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.7■■□□□ 1.38
SRRM4-204ENST00000641899 STRCP1A6NGW2 1772 aa23.7■■□□□ 1.38
SRRM4-204ENST00000641899 KCNA6P17658 529 aa23.68■■□□□ 1.38
SRRM4-204ENST00000641899 MROH1Q8NDA8 1641 aa23.68■■□□□ 1.38
SRRM4-204ENST00000641899 RRP7BPQ9NSQ0 103 aa23.67■■□□□ 1.38
SRRM4-204ENST00000641899 RGS17Q9UGC6 210 aaPredicted RBP23.67■■□□□ 1.38
SRRM4-204ENST00000641899 MAP3K1Q13233 1512 aa23.67■■□□□ 1.38
SRRM4-204ENST00000641899 PRDM15P57071 1507 aaPredicted RBP23.66■■□□□ 1.38
SRRM4-204ENST00000641899 PROSER2Q86WR7 435 aaPredicted RBP23.66■■□□□ 1.38
SRRM4-204ENST00000641899 TMEM94Q12767 1356 aa23.65■■□□□ 1.38
SRRM4-204ENST00000641899 APLP2Q06481 763 aa23.64■■□□□ 1.37
SRRM4-204ENST00000641899 CEP152O94986 1710 aa23.64■■□□□ 1.37
SRRM4-204ENST00000641899 BCANQ96GW7 911 aa23.63■■□□□ 1.37
SRRM4-204ENST00000641899 KANK4Q5T7N3 995 aaPredicted RBP23.62■■□□□ 1.37
SRRM4-204ENST00000641899 EFCAB6Q5THR3 1501 aa23.61■■□□□ 1.37
SRRM4-204ENST00000641899 HDGFP51858 240 aaKnown RBP23.59■■□□□ 1.37
SRRM4-204ENST00000641899 IDI1Q13907 227 aa23.59■■□□□ 1.37
SRRM4-204ENST00000641899 SLC26A8Q96RN1 970 aa23.59■■□□□ 1.37
SRRM4-204ENST00000641899 MSH6P52701 1360 aa23.59■■□□□ 1.37
SRRM4-204ENST00000641899 SLC52A1Q9NWF4 448 aa23.58■■□□□ 1.37
SRRM4-204ENST00000641899 ABCC5O15440 1437 aa23.58■■□□□ 1.36
SRRM4-204ENST00000641899 ANKRD30AQ9BXX3 1397 aa23.57■■□□□ 1.36
SRRM4-204ENST00000641899 PIK3C2BO00750 1634 aa23.56■■□□□ 1.36
SRRM4-204ENST00000641899 POTEAQ6S8J7 498 aa23.56■■□□□ 1.36
SRRM4-204ENST00000641899 NKTRP30414 1462 aaKnown RBP23.56■■□□□ 1.36
SRRM4-204ENST00000641899 KDM5AP29375 1690 aaKnown RBP23.55■■□□□ 1.36
SRRM4-204ENST00000641899 LMTK2Q8IWU2 1503 aa23.54■■□□□ 1.36
SRRM4-204ENST00000641899 CFAP65Q6ZU64 1925 aaKnown RBP23.53■■□□□ 1.36
SRRM4-204ENST00000641899 SLAIN2Q9P270 581 aa23.53■■□□□ 1.36
SRRM4-204ENST00000641899 DAPK1P53355 1430 aa23.52■■□□□ 1.36
SRRM4-204ENST00000641899 JCADQ9P266 1359 aa23.52■■□□□ 1.36
SRRM4-204ENST00000641899 PPP1R15AO75807 674 aaPredicted RBP23.51■■□□□ 1.35
SRRM4-204ENST00000641899 ROBO1Q9Y6N7 1651 aa23.49■■□□□ 1.35
SRRM4-204ENST00000641899 RBM33Q96EV2 1170 aaKnown RBP23.49■■□□□ 1.35
SRRM4-204ENST00000641899 XIRP1Q702N8 1843 aaKnown RBP23.48■■□□□ 1.35
SRRM4-204ENST00000641899 PTPN23Q9H3S7 1636 aa23.48■■□□□ 1.35
SRRM4-204ENST00000641899 TET3O43151 1660 aa23.48■■□□□ 1.35
SRRM4-204ENST00000641899 CHIC2Q9UKJ5 165 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms