RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SYCP2Q9BX26 1530 aa18.31■□□□□ 0.52
CLN3-257ENST00000637110 A2MP01023 1474 aa18.31■□□□□ 0.52
CLN3-257ENST00000637110 TIAM1Q13009 1591 aa18.28■□□□□ 0.52
CLN3-257ENST00000637110 INO80Q9ULG1 1556 aaPredicted RBP18.28■□□□□ 0.52
CLN3-257ENST00000637110 PLEKHH2Q8IVE3 1493 aa18.27■□□□□ 0.52
CLN3-257ENST00000637110 NEURL4Q96JN8 1562 aa18.26■□□□□ 0.51
CLN3-257ENST00000637110 NCOA2Q15596 1464 aa18.26■□□□□ 0.51
CLN3-257ENST00000637110 ZNF644Q9H582 1327 aaPredicted RBP18.25■□□□□ 0.51
CLN3-257ENST00000637110 ADGBQ8N7X0 1667 aa18.25■□□□□ 0.51
CLN3-257ENST00000637110 KIAA1107Q9UPP5 1409 aa18.24■□□□□ 0.51
CLN3-257ENST00000637110 ANKLE2Q86XL3 938 aa18.23■□□□□ 0.51
CLN3-257ENST00000637110 VWDEQ8N2E2 1590 aa18.22■□□□□ 0.51
CLN3-257ENST00000637110 LRRC9Q6ZRR7 1453 aa18.22■□□□□ 0.51
CLN3-257ENST00000637110 KANK4Q5T7N3 995 aaPredicted RBP18.22■□□□□ 0.51
CLN3-257ENST00000637110 TNRQ92752 1358 aa18.21■□□□□ 0.51
CLN3-257ENST00000637110 ALKQ9UM73 1620 aa18.2■□□□□ 0.5
CLN3-257ENST00000637110 THEMISQ8N1K5 641 aaPredicted RBP18.18■□□□□ 0.5
CLN3-257ENST00000637110 DEPDC5O75140 1603 aa18.18■□□□□ 0.5
CLN3-257ENST00000637110 RNF17Q9BXT8 1623 aaKnown RBP18.18■□□□□ 0.5
CLN3-257ENST00000637110 MAP3K1Q13233 1512 aa18.18■□□□□ 0.5
CLN3-257ENST00000637110 NPHP4O75161 1426 aaPredicted RBP18.17■□□□□ 0.5
CLN3-257ENST00000637110 MED14O60244 1454 aa18.17■□□□□ 0.5
CLN3-257ENST00000637110 FAM135AQ9P2D6 1515 aa18.17■□□□□ 0.5
CLN3-257ENST00000637110 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLN3-257ENST00000637110 PZPP20742 1482 aa18.16■□□□□ 0.5
CLN3-257ENST00000637110 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
CLN3-257ENST00000637110 SYNMO15061 1565 aa18.16■□□□□ 0.5
CLN3-257ENST00000637110 CAMSAP2Q08AD1 1489 aa18.15■□□□□ 0.5
CLN3-257ENST00000637110 IQGAP1P46940 1657 aa18.15■□□□□ 0.5
CLN3-257ENST00000637110 NLRP1Q9C000 1473 aa18.14■□□□□ 0.5
CLN3-257ENST00000637110 KDM5DQ9BY66 1539 aa18.14■□□□□ 0.49
CLN3-257ENST00000637110 UGGT1Q9NYU2 1555 aa18.14■□□□□ 0.49
CLN3-257ENST00000637110 RSPH4AQ5TD94 716 aa18.14■□□□□ 0.49
CLN3-257ENST00000637110 FBXO31Q5XUX0 539 aaPredicted RBP18.13■□□□□ 0.49
CLN3-257ENST00000637110 MBD5Q9P267 1494 aa18.13■□□□□ 0.49
CLN3-257ENST00000637110 TSPY4P0CV99 314 aa18.12■□□□□ 0.49
CLN3-257ENST00000637110 TSPY10P0CW01 314 aa18.12■□□□□ 0.49
CLN3-257ENST00000637110 LRRC7Q96NW7 1537 aa18.12■□□□□ 0.49
CLN3-257ENST00000637110 DHX29Q7Z478 1369 aaKnown RBP18.11■□□□□ 0.49
CLN3-257ENST00000637110 RTEL1-TNFRSF6BF6WH68 1400 aa18.11■□□□□ 0.49
CLN3-257ENST00000637110 CCDC141Q6ZP82 1450 aa18.11■□□□□ 0.49
CLN3-257ENST00000637110 MIA2Q96PC5 1412 aa18.1■□□□□ 0.49
CLN3-257ENST00000637110 RGS17Q9UGC6 210 aaPredicted RBP18.1■□□□□ 0.49
CLN3-257ENST00000637110 WASHC2CQ9Y4E1 1318 aa18.09■□□□□ 0.49
CLN3-257ENST00000637110 STRCP1A6NGW2 1772 aa18.09■□□□□ 0.49
CLN3-257ENST00000637110 MYOM3Q5VTT5 1437 aa18.08■□□□□ 0.49
CLN3-257ENST00000637110 KIF3BO15066 747 aa18.08■□□□□ 0.48
CLN3-257ENST00000637110 ARHGEF5Q12774 1597 aa18.03■□□□□ 0.48
CLN3-257ENST00000637110 ZC3H13Q5T200 1668 aaKnown RBP17.99■□□□□ 0.47
CLN3-257ENST00000637110 POTEAQ6S8J7 498 aa17.99■□□□□ 0.47
CLN3-257ENST00000637110 FAM135BQ49AJ0 1406 aa17.98■□□□□ 0.47
CLN3-257ENST00000637110 PTPN23Q9H3S7 1636 aa17.97■□□□□ 0.47
CLN3-257ENST00000637110 XIRP1Q702N8 1843 aaKnown RBP17.95■□□□□ 0.46
CLN3-257ENST00000637110 SCAF11Q99590 1463 aaKnown RBP17.95■□□□□ 0.46
CLN3-257ENST00000637110 FGD6Q6ZV73 1430 aa17.95■□□□□ 0.46
CLN3-257ENST00000637110 FAM50AQ14320 339 aaKnown RBP17.94■□□□□ 0.46
CLN3-257ENST00000637110 UBR1Q8IWV7 1749 aa17.93■□□□□ 0.46
CLN3-257ENST00000637110 PPARGC1BQ86YN6 1023 aaKnown RBP17.93■□□□□ 0.46
CLN3-257ENST00000637110 SETD1AO15047 1707 aaKnown RBP17.92■□□□□ 0.46
CLN3-257ENST00000637110 MAST1Q9Y2H9 1570 aa17.92■□□□□ 0.46
CLN3-257ENST00000637110 RRP7BPQ9NSQ0 103 aa17.92■□□□□ 0.46
CLN3-257ENST00000637110 CHIC2Q9UKJ5 165 aa17.92■□□□□ 0.46
CLN3-257ENST00000637110 ERVK-7P63135 1459 aa17.91■□□□□ 0.46
CLN3-257ENST00000637110 ABCC3O15438 1527 aa17.91■□□□□ 0.46
CLN3-257ENST00000637110 ABCC5O15440 1437 aa17.9■□□□□ 0.46
CLN3-257ENST00000637110 DAPK1P53355 1430 aa17.89■□□□□ 0.46
CLN3-257ENST00000637110 ROBO1Q9Y6N7 1651 aa17.89■□□□□ 0.45
CLN3-257ENST00000637110 TXNDC2Q86VQ3 553 aa17.88■□□□□ 0.45
CLN3-257ENST00000637110 EID1Q9Y6B2 187 aa17.88■□□□□ 0.45
CLN3-257ENST00000637110 KIF15Q9NS87 1388 aa17.88■□□□□ 0.45
CLN3-257ENST00000637110 CFAP65Q6ZU64 1925 aaKnown RBP17.88■□□□□ 0.45
CLN3-257ENST00000637110 SLIT1O75093 1534 aa17.88■□□□□ 0.45
CLN3-257ENST00000637110 ARHGAP23Q9P227 1491 aa17.87■□□□□ 0.45
CLN3-257ENST00000637110 ANKRD30AQ9BXX3 1397 aa17.85■□□□□ 0.45
CLN3-257ENST00000637110 DUOX2Q9NRD8 1548 aa17.85■□□□□ 0.45
CLN3-257ENST00000637110 EIF2AK4Q9P2K8 1649 aaKnown RBP17.85■□□□□ 0.45
CLN3-257ENST00000637110 CROCC2H7BZ55 1655 aa17.84■□□□□ 0.45
CLN3-257ENST00000637110 TMEM94Q12767 1356 aa17.84■□□□□ 0.45
CLN3-257ENST00000637110 LTKP29376 864 aa17.84■□□□□ 0.45
CLN3-257ENST00000637110 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLN3-257ENST00000637110 CEP152O94986 1710 aa17.82■□□□□ 0.44
CLN3-257ENST00000637110 PHLPP1O60346 1717 aa17.81■□□□□ 0.44
CLN3-257ENST00000637110 JCADQ9P266 1359 aa17.81■□□□□ 0.44
CLN3-257ENST00000637110 ITGAEP38570 1179 aa17.8■□□□□ 0.44
CLN3-257ENST00000637110 KCNA6P17658 529 aa17.79■□□□□ 0.44
CLN3-257ENST00000637110 UPF1Q92900 1129 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLN3-257ENST00000637110 ERBINQ96RT1 1412 aa17.79■□□□□ 0.44
CLN3-257ENST00000637110 PROSER2Q86WR7 435 aaPredicted RBP17.78■□□□□ 0.44
CLN3-257ENST00000637110 KANK1Q14678 1352 aa17.78■□□□□ 0.44
CLN3-257ENST00000637110 MROH1Q8NDA8 1641 aa17.77■□□□□ 0.44
CLN3-257ENST00000637110 ZNF772Q68DY9 489 aaPredicted RBP17.77■□□□□ 0.44
CLN3-257ENST00000637110 STAG3Q9UJ98 1225 aa17.77■□□□□ 0.44
CLN3-257ENST00000637110 MSH6P52701 1360 aa17.77■□□□□ 0.43
CLN3-257ENST00000637110 TMEM2Q9UHN6 1383 aa17.77■□□□□ 0.43
CLN3-257ENST00000637110 PRDM15P57071 1507 aaPredicted RBP17.76■□□□□ 0.43
CLN3-257ENST00000637110 NKTRP30414 1462 aaKnown RBP17.75■□□□□ 0.43
CLN3-257ENST00000637110 ARHGAP31Q2M1Z3 1444 aa17.75■□□□□ 0.43
CLN3-257ENST00000637110 KDM5AP29375 1690 aaKnown RBP17.75■□□□□ 0.43
CLN3-257ENST00000637110 MEX3CQ5U5Q3 659 aaKnown RBP17.75■□□□□ 0.43
CLN3-257ENST00000637110 PIK3C2BO00750 1634 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms