RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 SIGLEC1Q9BZZ2 1709 aa21.84■■□□□ 1.09
LIMS3-206ENST00000631420 ARID4BQ4LE39 1312 aaPredicted RBP21.83■■□□□ 1.09
LIMS3-206ENST00000631420 EIF2AK4Q9P2K8 1649 aaKnown RBP21.83■■□□□ 1.09
LIMS3-206ENST00000631420 ACIN1Q9UKV3 1341 aaKnown RBP21.83■■□□□ 1.08
LIMS3-206ENST00000631420 MLECQ14165 292 aa21.82■■□□□ 1.08
LIMS3-206ENST00000631420 SLC4A1APQ9BWU0 796 aaKnown RBP21.82■■□□□ 1.08
LIMS3-206ENST00000631420 AGLP35573 1532 aa21.81■■□□□ 1.08
LIMS3-206ENST00000631420 PZPP20742 1482 aa21.8■■□□□ 1.08
LIMS3-206ENST00000631420 CCER1Q8TC90 406 aaPredicted RBP21.8■■□□□ 1.08
LIMS3-206ENST00000631420 UNC13BO14795 1591 aa21.8■■□□□ 1.08
LIMS3-206ENST00000631420 MROH1Q8NDA8 1641 aa21.78■■□□□ 1.08
LIMS3-206ENST00000631420 FOXD1Q16676 465 aa21.77■■□□□ 1.08
LIMS3-206ENST00000631420 BCORL1Q5H9F3 1711 aa21.77■■□□□ 1.08
LIMS3-206ENST00000631420 DEPDC5O75140 1603 aa21.77■■□□□ 1.08
LIMS3-206ENST00000631420 KDM5DQ9BY66 1539 aa21.77■■□□□ 1.07
LIMS3-206ENST00000631420 KANK1Q14678 1352 aa21.76■■□□□ 1.07
LIMS3-206ENST00000631420 RNF17Q9BXT8 1623 aaKnown RBP21.75■■□□□ 1.07
LIMS3-206ENST00000631420 PKD2Q13563 968 aa21.75■■□□□ 1.07
LIMS3-206ENST00000631420 WASHC2CQ9Y4E1 1318 aa21.75■■□□□ 1.07
LIMS3-206ENST00000631420 FAM135AQ9P2D6 1515 aa21.75■■□□□ 1.07
LIMS3-206ENST00000631420 PRDM15P57071 1507 aaPredicted RBP21.74■■□□□ 1.07
LIMS3-206ENST00000631420 VWDEQ8N2E2 1590 aa21.72■■□□□ 1.07
LIMS3-206ENST00000631420 IQGAP3Q86VI3 1631 aa21.71■■□□□ 1.07
LIMS3-206ENST00000631420 PPP6R1Q9UPN7 881 aa21.7■■□□□ 1.06
LIMS3-206ENST00000631420 ABCC3O15438 1527 aa21.67■■□□□ 1.06
LIMS3-206ENST00000631420 LMTK2Q8IWU2 1503 aa21.66■■□□□ 1.06
LIMS3-206ENST00000631420 ESF1Q9H501 851 aaKnown RBP21.64■■□□□ 1.05
LIMS3-206ENST00000631420 SIN3AQ96ST3 1273 aa21.63■■□□□ 1.05
LIMS3-206ENST00000631420 CEP152O94986 1710 aa21.63■■□□□ 1.05
LIMS3-206ENST00000631420 ANKRD30BQ9BXX2 1392 aa21.62■■□□□ 1.05
LIMS3-206ENST00000631420 TET3O43151 1660 aa21.6■■□□□ 1.05
LIMS3-206ENST00000631420 NPATQ14207 1427 aa21.6■■□□□ 1.05
LIMS3-206ENST00000631420 CLSPNQ9HAW4 1339 aa21.59■■□□□ 1.05
LIMS3-206ENST00000631420 EFCAB6Q5THR3 1501 aa21.59■■□□□ 1.05
LIMS3-206ENST00000631420 ZMYM3Q14202 1370 aa21.58■■□□□ 1.05
LIMS3-206ENST00000631420 E9PCH4 1651 aa21.58■■□□□ 1.05
LIMS3-206ENST00000631420 NEUROD1Q13562 356 aa21.57■■□□□ 1.04
LIMS3-206ENST00000631420 FBXO31Q5XUX0 539 aaPredicted RBP21.57■■□□□ 1.04
LIMS3-206ENST00000631420 PLA2R1Q13018 1463 aa21.57■■□□□ 1.04
LIMS3-206ENST00000631420 CLTCQ00610 1675 aaKnown RBP21.57■■□□□ 1.04
LIMS3-206ENST00000631420 CAMSAP1Q5T5Y3 1602 aa21.56■■□□□ 1.04
LIMS3-206ENST00000631420 ARHGAP31Q2M1Z3 1444 aa21.56■■□□□ 1.04
LIMS3-206ENST00000631420 ZC3H13Q5T200 1668 aaKnown RBP21.56■■□□□ 1.04
LIMS3-206ENST00000631420 CEBPAP49715 358 aaPredicted RBP21.55■■□□□ 1.04
LIMS3-206ENST00000631420 CNTLNQ9NXG0 1405 aa21.54■■□□□ 1.04
LIMS3-206ENST00000631420 PTPRTO14522 1441 aa21.53■■□□□ 1.04
LIMS3-206ENST00000631420 PLPPR3Q6T4P5 718 aa21.53■■□□□ 1.04
LIMS3-206ENST00000631420 RPRD2Q5VT52 1461 aaKnown RBP21.52■■□□□ 1.04
LIMS3-206ENST00000631420 ADAMTSL3P82987 1691 aa21.5■■□□□ 1.03
LIMS3-206ENST00000631420 NOS1P29475 1434 aa21.5■■□□□ 1.03
LIMS3-206ENST00000631420 MADDQ8WXG6 1647 aa21.49■■□□□ 1.03
LIMS3-206ENST00000631420 FER1L4A9Z1Z3 1794 aa21.48■■□□□ 1.03
LIMS3-206ENST00000631420 CFAP65Q6ZU64 1925 aaKnown RBP21.47■■□□□ 1.03
LIMS3-206ENST00000631420 CCDC144AA2RUR9 1427 aa21.46■■□□□ 1.03
LIMS3-206ENST00000631420 ERVK-7P63135 1459 aa21.45■■□□□ 1.03
LIMS3-206ENST00000631420 TRPM2O94759 1503 aa21.45■■□□□ 1.02
LIMS3-206ENST00000631420 KDM4FA0A1W2PPD8 638 aa21.44■■□□□ 1.02
LIMS3-206ENST00000631420 UGGT1Q9NYU2 1555 aa21.44■■□□□ 1.02
LIMS3-206ENST00000631420 SPHKAPQ2M3C7 1700 aa21.43■■□□□ 1.02
LIMS3-206ENST00000631420 MROH2AA6NES4 1674 aa21.43■■□□□ 1.02
LIMS3-206ENST00000631420 RIMS1Q86UR5 1692 aaKnown RBP21.43■■□□□ 1.02
LIMS3-206ENST00000631420 IDI1Q13907 227 aa21.43■■□□□ 1.02
LIMS3-206ENST00000631420 SYNMO15061 1565 aa21.42■■□□□ 1.02
LIMS3-206ENST00000631420 PREX1Q8TCU6 1659 aa21.41■■□□□ 1.02
LIMS3-206ENST00000631420 SPATA31D1Q6ZQQ2 1576 aa21.4■■□□□ 1.02
LIMS3-206ENST00000631420 C3P01024 1663 aa21.4■■□□□ 1.02
LIMS3-206ENST00000631420 RGL3Q3MIN7 710 aa21.4■■□□□ 1.02
LIMS3-206ENST00000631420 SLC52A1Q9NWF4 448 aa21.4■■□□□ 1.02
LIMS3-206ENST00000631420 CLTCL1P53675 1640 aa21.39■■□□□ 1.02
LIMS3-206ENST00000631420 CHGAP10645 457 aaKnown RBP21.39■■□□□ 1.01
LIMS3-206ENST00000631420 TNRQ92752 1358 aa21.39■■□□□ 1.01
LIMS3-206ENST00000631420 PTPRMP28827 1452 aa21.38■■□□□ 1.01
LIMS3-206ENST00000631420 L3MBTL2Q969R5 705 aa21.37■■□□□ 1.01
LIMS3-206ENST00000631420 TONSLQ96HA7 1378 aa21.36■■□□□ 1.01
LIMS3-206ENST00000631420 ZEB1P37275 1124 aaPredicted RBP21.36■■□□□ 1.01
LIMS3-206ENST00000631420 TIMELESSQ9UNS1 1208 aa21.34■■□□□ 1.01
LIMS3-206ENST00000631420 SPATA31E1Q6ZUB1 1445 aa21.34■■□□□ 1.01
LIMS3-206ENST00000631420 PIK3C2BO00750 1634 aa21.32■■□□□ 1
LIMS3-206ENST00000631420 STAG3Q9UJ98 1225 aa21.3■■□□□ 1
LIMS3-206ENST00000631420 ZNF326Q5BKZ1 582 aaKnown RBP21.29■■□□□ 1
LIMS3-206ENST00000631420 DCAF11Q8TEB1 546 aa21.29■■□□□ 1
LIMS3-206ENST00000631420 KDM2AQ9Y2K7 1162 aa21.29■■□□□ 1
LIMS3-206ENST00000631420 PPP1R15AO75807 674 aaPredicted RBP21.28■■□□□ 1
LIMS3-206ENST00000631420 ADGRB3O60242 1522 aa21.25■□□□□ 0.99
LIMS3-206ENST00000631420 NLRP1Q9C000 1473 aa21.25■□□□□ 0.99
LIMS3-206ENST00000631420 A2ML1A8K2U0 1454 aa21.24■□□□□ 0.99
LIMS3-206ENST00000631420 KIF1BO60333 1816 aa21.24■□□□□ 0.99
LIMS3-206ENST00000631420 NUTM2DQ5VT03 806 aaPredicted RBP21.23■□□□□ 0.99
LIMS3-206ENST00000631420 TMEM131LA2VDJ0 1609 aa21.23■□□□□ 0.99
LIMS3-206ENST00000631420 NBPF8Q3BBV2 869 aa21.22■□□□□ 0.99
LIMS3-206ENST00000631420 NEURL4Q96JN8 1562 aa21.21■□□□□ 0.99
LIMS3-206ENST00000631420 RPGRIP1LQ68CZ1 1315 aa21.2■□□□□ 0.98
LIMS3-206ENST00000631420 MYO3AQ8NEV4 1616 aa21.19■□□□□ 0.98
LIMS3-206ENST00000631420 ADGRF5Q8IZF2 1346 aa21.18■□□□□ 0.98
LIMS3-206ENST00000631420 THEMISQ8N1K5 641 aaPredicted RBP21.17■□□□□ 0.98
LIMS3-206ENST00000631420 MYO5BQ9ULV0 1848 aa21.16■□□□□ 0.98
LIMS3-206ENST00000631420 SETD1BQ9UPS6 1966 aaKnown RBP21.16■□□□□ 0.98
LIMS3-206ENST00000631420 UHRF1BP1Q6BDS2 1440 aa21.16■□□□□ 0.98
LIMS3-206ENST00000631420 UBR1Q8IWV7 1749 aa21.15■□□□□ 0.98
LIMS3-206ENST00000631420 CEP170BQ9Y4F5 1589 aaPredicted RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms