RNA–Protein interactions for RNA: ENST00000627685.2

TCF4-260, Transcript of transcription factor 4, humanhuman

TSL 5

Gene TCF4, Length 882 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-260ENST00000627685 PLEKHD1A6NEE1 506 aa12.47□□□□□ -0.41
TCF4-260ENST00000627685 PCDHB13Q9Y5F0 798 aa12.47□□□□□ -0.41
TCF4-260ENST00000627685 ABCC1P33527 1531 aa12.47□□□□□ -0.41
TCF4-260ENST00000627685 CDC42BPAQ5VT25 1732 aa12.46□□□□□ -0.41
TCF4-260ENST00000627685 LOC105371045A0A1W2PR82 267 aa12.46□□□□□ -0.41
TCF4-260ENST00000627685 YEATS2Q9ULM3 1422 aa12.45□□□□□ -0.42
TCF4-260ENST00000627685 DENND4BO75064 1496 aaPredicted RBP12.45□□□□□ -0.42
TCF4-260ENST00000627685 SAMD9LQ8IVG5 1584 aa12.44□□□□□ -0.42
TCF4-260ENST00000627685 RAPGEF3O95398 923 aa12.44□□□□□ -0.42
TCF4-260ENST00000627685 TIAM1Q13009 1591 aa12.43□□□□□ -0.42
TCF4-260ENST00000627685 GPATCH8Q9UKJ3 1502 aaKnown RBP12.43□□□□□ -0.42
TCF4-260ENST00000627685 POTEIP0CG38 1075 aa12.43□□□□□ -0.42
TCF4-260ENST00000627685 VPS8Q8N3P4 1428 aa12.43□□□□□ -0.42
TCF4-260ENST00000627685 EHBP1L1Q8N3D4 1523 aa12.42□□□□□ -0.42
TCF4-260ENST00000627685 ADAMTSL3P82987 1691 aa12.42□□□□□ -0.42
TCF4-260ENST00000627685 SGIP1Q9BQI5 828 aa12.42□□□□□ -0.42
TCF4-260ENST00000627685 ITSN2Q9NZM3 1697 aa12.42□□□□□ -0.42
TCF4-260ENST00000627685 ARHGAP5Q13017 1502 aa12.41□□□□□ -0.42
TCF4-260ENST00000627685 SCAPERQ9BY12 1400 aa12.4□□□□□ -0.42
TCF4-260ENST00000627685 IFNL1Q8IU54 200 aa12.4□□□□□ -0.42
TCF4-260ENST00000627685 ZFYVE16Q7Z3T8 1539 aa12.4□□□□□ -0.42
TCF4-260ENST00000627685 TRAPPC8Q9Y2L5 1435 aa12.39□□□□□ -0.43
TCF4-260ENST00000627685 TRPC6Q9Y210 931 aa12.39□□□□□ -0.43
TCF4-260ENST00000627685 ABCA6Q8N139 1617 aa12.39□□□□□ -0.43
TCF4-260ENST00000627685 BCORL1Q5H9F3 1711 aa12.39□□□□□ -0.43
TCF4-260ENST00000627685 MAGI2Q86UL8 1455 aa12.39□□□□□ -0.43
TCF4-260ENST00000627685 DIP2CQ9Y2E4 1556 aa12.39□□□□□ -0.43
TCF4-260ENST00000627685 CHRM1P11229 460 aaPredicted RBP12.37□□□□□ -0.43
TCF4-260ENST00000627685 ZNF518AQ6AHZ1 1483 aa12.37□□□□□ -0.43
TCF4-260ENST00000627685 HECW2Q9P2P5 1572 aa12.37□□□□□ -0.43
TCF4-260ENST00000627685 REREQ9P2R6 1566 aa12.37□□□□□ -0.43
TCF4-260ENST00000627685 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
TCF4-260ENST00000627685 SYCP2Q9BX26 1530 aa12.37□□□□□ -0.43
TCF4-260ENST00000627685 ATP1B4Q9UN42 357 aaPredicted RBP12.36□□□□□ -0.43
TCF4-260ENST00000627685 PCDHB8Q9UN66 801 aa12.36□□□□□ -0.43
TCF4-260ENST00000627685 MADDQ8WXG6 1647 aa12.36□□□□□ -0.43
TCF4-260ENST00000627685 INO80Q9ULG1 1556 aaPredicted RBP12.35□□□□□ -0.43
TCF4-260ENST00000627685 MLH3Q9UHC1 1453 aa12.35□□□□□ -0.43
TCF4-260ENST00000627685 CDK11AQ9UQ88 783 aaPredicted RBP12.35□□□□□ -0.43
TCF4-260ENST00000627685 KIDINS220Q9ULH0 1771 aa12.35□□□□□ -0.43
TCF4-260ENST00000627685 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
TCF4-260ENST00000627685 LRRC9Q6ZRR7 1453 aa12.34□□□□□ -0.43
TCF4-260ENST00000627685 MBD5Q9P267 1494 aa12.34□□□□□ -0.43
TCF4-260ENST00000627685 PLXNC1O60486 1568 aa12.32□□□□□ -0.44
TCF4-260ENST00000627685 ATMINO43313 823 aaPredicted RBP12.32□□□□□ -0.44
TCF4-260ENST00000627685 EFCAB2Q5VUJ9 269 aa12.32□□□□□ -0.44
TCF4-260ENST00000627685 BMP2KQ9NSY1 1161 aaPredicted RBP12.32□□□□□ -0.44
TCF4-260ENST00000627685 KIAA1107Q9UPP5 1409 aa12.31□□□□□ -0.44
TCF4-260ENST00000627685 TIE1P35590 1138 aa12.31□□□□□ -0.44
TCF4-260ENST00000627685 ASTLQ6HA08 431 aaPredicted RBP12.31□□□□□ -0.44
TCF4-260ENST00000627685 ZNF467Q7Z7K2 595 aaPredicted RBP12.31□□□□□ -0.44
TCF4-260ENST00000627685 MTUS2Q5JR59 1369 aa12.3□□□□□ -0.44
TCF4-260ENST00000627685 C9orf84Q5VXU9 1444 aa12.3□□□□□ -0.44
TCF4-260ENST00000627685 PTPRMP28827 1452 aa12.3□□□□□ -0.44
TCF4-260ENST00000627685 ATP10AO60312 1499 aa12.29□□□□□ -0.44
TCF4-260ENST00000627685 SUPT6HQ7KZ85 1726 aaKnown RBP12.29□□□□□ -0.44
TCF4-260ENST00000627685 AGLP35573 1532 aa12.29□□□□□ -0.44
TCF4-260ENST00000627685 ATN1P54259 1190 aaPredicted RBP12.29□□□□□ -0.44
TCF4-260ENST00000627685 PELP1Q8IZL8 1130 aaKnown RBP12.29□□□□□ -0.44
TCF4-260ENST00000627685 AFAP1Q8N556 730 aa12.29□□□□□ -0.44
TCF4-260ENST00000627685 KANK4Q5T7N3 995 aaPredicted RBP12.28□□□□□ -0.44
TCF4-260ENST00000627685 TTLL13PA6NNM8 815 aa12.27□□□□□ -0.45
TCF4-260ENST00000627685 TMEM106CQ9BVX2 250 aa12.27□□□□□ -0.45
TCF4-260ENST00000627685 ZNF644Q9H582 1327 aaPredicted RBP12.27□□□□□ -0.45
TCF4-260ENST00000627685 CAMSAP2Q08AD1 1489 aa12.27□□□□□ -0.45
TCF4-260ENST00000627685 ATP7AQ04656 1500 aa12.27□□□□□ -0.45
TCF4-260ENST00000627685 CCNB3Q8WWL7 1395 aa12.26□□□□□ -0.45
TCF4-260ENST00000627685 RIMS1Q86UR5 1692 aaKnown RBP12.26□□□□□ -0.45
TCF4-260ENST00000627685 PLEKHH2Q8IVE3 1493 aa12.25□□□□□ -0.45
TCF4-260ENST00000627685 ARHGEF5Q12774 1597 aa12.25□□□□□ -0.45
TCF4-260ENST00000627685 ECM2O94769 699 aaPredicted RBP12.23□□□□□ -0.45
TCF4-260ENST00000627685 LMTK3Q96Q04 1460 aa12.22□□□□□ -0.45
TCF4-260ENST00000627685 PKD2Q13563 968 aa12.22□□□□□ -0.45
TCF4-260ENST00000627685 ADGBQ8N7X0 1667 aa12.22□□□□□ -0.45
TCF4-260ENST00000627685 FER1L4A9Z1Z3 1794 aa12.21□□□□□ -0.45
TCF4-260ENST00000627685 MAST1Q9Y2H9 1570 aa12.21□□□□□ -0.46
TCF4-260ENST00000627685 MYOM3Q5VTT5 1437 aa12.2□□□□□ -0.46
TCF4-260ENST00000627685 PSEN1P49768 467 aa12.2□□□□□ -0.46
TCF4-260ENST00000627685 HNRNPMP52272 730 aaKnown RBP eCLIP12.2□□□□□ -0.467e-6■■■□□ 17
TCF4-260ENST00000627685 CFDP1Q9UEE9 299 aaPredicted RBP12.2□□□□□ -0.46
TCF4-260ENST00000627685 TRIM35Q9UPQ4 493 aa12.2□□□□□ -0.46
TCF4-260ENST00000627685 CCDC141Q6ZP82 1450 aa12.2□□□□□ -0.46
TCF4-260ENST00000627685 PDAP1Q13442 181 aaKnown RBP12.19□□□□□ -0.46
TCF4-260ENST00000627685 SLC39A7Q92504 469 aa12.19□□□□□ -0.46
TCF4-260ENST00000627685 TCOF1Q13428 1488 aaKnown RBP12.19□□□□□ -0.46
TCF4-260ENST00000627685 RTEL1-TNFRSF6BF6WH68 1400 aa12.19□□□□□ -0.46
TCF4-260ENST00000627685 MIA2Q96PC5 1412 aa12.18□□□□□ -0.46
TCF4-260ENST00000627685 A2MP01023 1474 aa12.17□□□□□ -0.46
TCF4-260ENST00000627685 C7P10643 843 aa12.17□□□□□ -0.46
TCF4-260ENST00000627685 METRNQ9UJH8 293 aa12.17□□□□□ -0.46
TCF4-260ENST00000627685 MROH1Q8NDA8 1641 aa12.17□□□□□ -0.46
TCF4-260ENST00000627685 CROCC2H7BZ55 1655 aa12.16□□□□□ -0.46
TCF4-260ENST00000627685 RIOK3O14730 519 aaKnown RBP12.16□□□□□ -0.46
TCF4-260ENST00000627685 RNF25Q96BH1 459 aaPredicted RBP12.16□□□□□ -0.46
TCF4-260ENST00000627685 C3P01024 1663 aa12.16□□□□□ -0.46
TCF4-260ENST00000627685 ZNF777Q9ULD5 760 aaPredicted RBP12.15□□□□□ -0.46
TCF4-260ENST00000627685 SPAG9O60271 1321 aaKnown RBP12.14□□□□□ -0.47
TCF4-260ENST00000627685 FGD6Q6ZV73 1430 aa12.14□□□□□ -0.47
TCF4-260ENST00000627685 PTPN23Q9H3S7 1636 aa12.14□□□□□ -0.47
TCF4-260ENST00000627685 MROH2AA6NES4 1674 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms