RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RNF17Q9BXT8 1623 aaKnown RBP28.8■■■□□ 2.2
SQSTM1-216ENST00000626660 RIMS1Q86UR5 1692 aaKnown RBP28.79■■■□□ 2.2
SQSTM1-216ENST00000626660 PPP6R1Q9UPN7 881 aa28.78■■■□□ 2.2
SQSTM1-216ENST00000626660 GCC2Q8IWJ2 1684 aa28.76■■■□□ 2.19
SQSTM1-216ENST00000626660 CNTLNQ9NXG0 1405 aa28.75■■■□□ 2.19
SQSTM1-216ENST00000626660 HFM1A2PYH4 1435 aa28.74■■■□□ 2.19
SQSTM1-216ENST00000626660 FAM135AQ9P2D6 1515 aa28.74■■■□□ 2.19
SQSTM1-216ENST00000626660 NAIPQ13075 1403 aa28.72■■■□□ 2.19
SQSTM1-216ENST00000626660 DEPDC5O75140 1603 aa28.72■■■□□ 2.19
SQSTM1-216ENST00000626660 CLTCQ00610 1675 aaKnown RBP28.7■■■□□ 2.19
SQSTM1-216ENST00000626660 MROH1Q8NDA8 1641 aa28.7■■■□□ 2.19
SQSTM1-216ENST00000626660 KANK1Q14678 1352 aa28.7■■■□□ 2.18
SQSTM1-216ENST00000626660 PRDM15P57071 1507 aaPredicted RBP28.69■■■□□ 2.18
SQSTM1-216ENST00000626660 KDM5DQ9BY66 1539 aa28.69■■■□□ 2.18
SQSTM1-216ENST00000626660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.69■■■□□ 2.18
SQSTM1-216ENST00000626660 PTPRMP28827 1452 aa28.69■■■□□ 2.18
SQSTM1-216ENST00000626660 WASHC2CQ9Y4E1 1318 aa28.69■■■□□ 2.18
SQSTM1-216ENST00000626660 MROH2AA6NES4 1674 aa28.68■■■□□ 2.18
SQSTM1-216ENST00000626660 ZC3H13Q5T200 1668 aaKnown RBP28.67■■■□□ 2.18
SQSTM1-216ENST00000626660 UNC13BO14795 1591 aa28.64■■■□□ 2.18
SQSTM1-216ENST00000626660 ABCC3O15438 1527 aa28.63■■■□□ 2.17
SQSTM1-216ENST00000626660 CEP152O94986 1710 aa28.62■■■□□ 2.17
SQSTM1-216ENST00000626660 PLPPR3Q6T4P5 718 aa28.61■■■□□ 2.17
SQSTM1-216ENST00000626660 C3P01024 1663 aa28.6■■■□□ 2.17
SQSTM1-216ENST00000626660 ZMYM3Q14202 1370 aa28.6■■■□□ 2.17
SQSTM1-216ENST00000626660 TRIM26Q12899 539 aaPredicted RBP28.59■■■□□ 2.17
SQSTM1-216ENST00000626660 VWDEQ8N2E2 1590 aa28.58■■■□□ 2.17
SQSTM1-216ENST00000626660 SETD5Q9C0A6 1442 aa28.58■■■□□ 2.17
SQSTM1-216ENST00000626660 CEBPAP49715 358 aaPredicted RBP28.56■■■□□ 2.16
SQSTM1-216ENST00000626660 CAMSAP1Q5T5Y3 1602 aa28.56■■■□□ 2.16
SQSTM1-216ENST00000626660 NUP155O75694 1391 aa28.55■■■□□ 2.16
SQSTM1-216ENST00000626660 FBXO41Q8TF61 875 aa28.55■■■□□ 2.16
SQSTM1-216ENST00000626660 LMTK2Q8IWU2 1503 aa28.54■■■□□ 2.16
SQSTM1-216ENST00000626660 IQGAP3Q86VI3 1631 aa28.53■■■□□ 2.16
SQSTM1-216ENST00000626660 TRIM52Q96A61 297 aa28.51■■■□□ 2.15
SQSTM1-216ENST00000626660 ACIN1Q9UKV3 1341 aaKnown RBP28.5■■■□□ 2.15
SQSTM1-216ENST00000626660 PZPP20742 1482 aa28.5■■■□□ 2.15
SQSTM1-216ENST00000626660 TET3O43151 1660 aa28.49■■■□□ 2.15
SQSTM1-216ENST00000626660 SETD1BQ9UPS6 1966 aaKnown RBP28.49■■■□□ 2.15
SQSTM1-216ENST00000626660 NPATQ14207 1427 aa28.47■■■□□ 2.15
SQSTM1-216ENST00000626660 ARHGAP31Q2M1Z3 1444 aa28.47■■■□□ 2.15
SQSTM1-216ENST00000626660 EFCAB6Q5THR3 1501 aa28.47■■■□□ 2.15
SQSTM1-216ENST00000626660 RAB3GAP2Q9H2M9 1393 aa28.47■■■□□ 2.15
SQSTM1-216ENST00000626660 CFAP65Q6ZU64 1925 aaKnown RBP28.46■■■□□ 2.15
SQSTM1-216ENST00000626660 FBXO31Q5XUX0 539 aaPredicted RBP28.41■■■□□ 2.14
SQSTM1-216ENST00000626660 RPRD2Q5VT52 1461 aaKnown RBP28.4■■■□□ 2.14
SQSTM1-216ENST00000626660 PREX1Q8TCU6 1659 aa28.39■■■□□ 2.14
SQSTM1-216ENST00000626660 ERVK-7P63135 1459 aa28.39■■■□□ 2.13
SQSTM1-216ENST00000626660 TNRQ92752 1358 aa28.38■■■□□ 2.13
SQSTM1-216ENST00000626660 HRCP23327 699 aa28.38■■■□□ 2.13
SQSTM1-216ENST00000626660 SPATA31D1Q6ZQQ2 1576 aa28.37■■■□□ 2.13
SQSTM1-216ENST00000626660 E9PCH4 1651 aa28.36■■■□□ 2.13
SQSTM1-216ENST00000626660 SLC4A1APQ9BWU0 796 aaKnown RBP28.36■■■□□ 2.13
SQSTM1-216ENST00000626660 UHRF1BP1Q6BDS2 1440 aa28.35■■■□□ 2.13
SQSTM1-216ENST00000626660 MYO3AQ8NEV4 1616 aa28.32■■■□□ 2.12
SQSTM1-216ENST00000626660 PKD2Q13563 968 aa28.29■■■□□ 2.12
SQSTM1-216ENST00000626660 NOS1P29475 1434 aa28.28■■■□□ 2.12
SQSTM1-216ENST00000626660 MPHOSPH9Q99550 1183 aa28.28■■■□□ 2.12
SQSTM1-216ENST00000626660 NLRP1Q9C000 1473 aa28.27■■■□□ 2.12
SQSTM1-216ENST00000626660 LMTK3Q96Q04 1460 aa28.27■■■□□ 2.12
SQSTM1-216ENST00000626660 ZNF142P52746 1687 aaPredicted RBP28.26■■■□□ 2.11
SQSTM1-216ENST00000626660 SYNMO15061 1565 aa28.24■■■□□ 2.11
SQSTM1-216ENST00000626660 CEP170BQ9Y4F5 1589 aaPredicted RBP28.24■■■□□ 2.11
SQSTM1-216ENST00000626660 SPHKAPQ2M3C7 1700 aa28.23■■■□□ 2.11
SQSTM1-216ENST00000626660 A2ML1A8K2U0 1454 aa28.23■■■□□ 2.11
SQSTM1-216ENST00000626660 HSPA2P54652 639 aa28.22■■■□□ 2.11
SQSTM1-216ENST00000626660 PCGF6Q9BYE7 350 aa28.22■■■□□ 2.11
SQSTM1-216ENST00000626660 SLC52A1Q9NWF4 448 aa28.2■■■□□ 2.1
SQSTM1-216ENST00000626660 PTPRTO14522 1441 aa28.18■■■□□ 2.1
SQSTM1-216ENST00000626660 UGGT1Q9NYU2 1555 aa28.16■■■□□ 2.1
SQSTM1-216ENST00000626660 PIK3C2BO00750 1634 aa28.15■■■□□ 2.1
SQSTM1-216ENST00000626660 TRPM2O94759 1503 aa28.15■■■□□ 2.1
SQSTM1-216ENST00000626660 IDI1Q13907 227 aa28.15■■■□□ 2.1
SQSTM1-216ENST00000626660 FOXD1Q16676 465 aa28.15■■■□□ 2.1
SQSTM1-216ENST00000626660 STAG3Q9UJ98 1225 aa28.14■■■□□ 2.1
SQSTM1-216ENST00000626660 THEMISQ8N1K5 641 aaPredicted RBP28.12■■■□□ 2.09
SQSTM1-216ENST00000626660 UBR1Q8IWV7 1749 aa28.11■■■□□ 2.09
SQSTM1-216ENST00000626660 KDM5AP29375 1690 aaKnown RBP28.1■■■□□ 2.09
SQSTM1-216ENST00000626660 PLA2R1Q13018 1463 aa28.09■■■□□ 2.09
SQSTM1-216ENST00000626660 ADGRB3O60242 1522 aa28.08■■■□□ 2.09
SQSTM1-216ENST00000626660 CLTCL1P53675 1640 aa28.07■■■□□ 2.08
SQSTM1-216ENST00000626660 CHGAP10645 457 aaKnown RBP28.06■■■□□ 2.08
SQSTM1-216ENST00000626660 CERKQ8TCT0 537 aa28.05■■■□□ 2.08
SQSTM1-216ENST00000626660 CCDC144AA2RUR9 1427 aa28.04■■■□□ 2.08
SQSTM1-216ENST00000626660 KIF1BO60333 1816 aa28.04■■■□□ 2.08
SQSTM1-216ENST00000626660 MYO5BQ9ULV0 1848 aa28.03■■■□□ 2.08
SQSTM1-216ENST00000626660 TMEM131LA2VDJ0 1609 aa28.03■■■□□ 2.08
SQSTM1-216ENST00000626660 ANKRD30BQ9BXX2 1392 aa27.99■■■□□ 2.07
SQSTM1-216ENST00000626660 SLIT1O75093 1534 aa27.97■■■□□ 2.07
SQSTM1-216ENST00000626660 POLR1AO95602 1720 aaPredicted RBP27.96■■■□□ 2.07
SQSTM1-216ENST00000626660 ANKLE2Q86XL3 938 aa27.96■■■□□ 2.07
SQSTM1-216ENST00000626660 DHX57Q6P158 1386 aaKnown RBP27.96■■■□□ 2.07
SQSTM1-216ENST00000626660 TMEM2Q9UHN6 1383 aa27.96■■■□□ 2.07
SQSTM1-216ENST00000626660 STRCQ7RTU9 1775 aa27.96■■■□□ 2.07
SQSTM1-216ENST00000626660 ARHGAP23Q9P227 1491 aa27.95■■■□□ 2.07
SQSTM1-216ENST00000626660 DMRT2Q9Y5R5 561 aa27.94■■■□□ 2.06
SQSTM1-216ENST00000626660 EID1Q9Y6B2 187 aa27.94■■■□□ 2.06
SQSTM1-216ENST00000626660 ZNF326Q5BKZ1 582 aaKnown RBP27.93■■■□□ 2.06
SQSTM1-216ENST00000626660 NCKAP5LQ9HCH0 1330 aa27.92■■■□□ 2.06
SQSTM1-216ENST00000626660 HDGFP51858 240 aaKnown RBP27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms