RNA–Protein interactions for RNA: ENST00000624720.1

USB1-216, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

Gene USB1, Length 2,895 nt, Biotype TEC, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-216ENST00000624720 PLEKHD1A6NEE1 506 aa12.2□□□□□ -0.46
USB1-216ENST00000624720 PTPRGP23470 1445 aa12.19□□□□□ -0.46
USB1-216ENST00000624720 DHX57Q6P158 1386 aaKnown RBP12.19□□□□□ -0.46
USB1-216ENST00000624720 CFDP1Q9UEE9 299 aaPredicted RBP12.19□□□□□ -0.46
USB1-216ENST00000624720 HIRIP3Q9BW71 556 aaPredicted RBP12.19□□□□□ -0.46
USB1-216ENST00000624720 FGD6Q6ZV73 1430 aa12.19□□□□□ -0.46
USB1-216ENST00000624720 TMED8Q6PL24 325 aaPredicted RBP12.18□□□□□ -0.46
USB1-216ENST00000624720 RGS22Q8NE09 1264 aa12.18□□□□□ -0.46
USB1-216ENST00000624720 PTPRKQ15262 1439 aa12.17□□□□□ -0.46
USB1-216ENST00000624720 KIAA0556O60303 1618 aa12.17□□□□□ -0.46
USB1-216ENST00000624720 NUP153P49790 1475 aaKnown RBP12.17□□□□□ -0.46
USB1-216ENST00000624720 ERCC6L2Q5T890 1561 aa12.16□□□□□ -0.46
USB1-216ENST00000624720 UGGT2Q9NYU1 1516 aa12.15□□□□□ -0.46
USB1-216ENST00000624720 CLSTN1O94985 981 aa12.15□□□□□ -0.46
USB1-216ENST00000624720 FAM193AP78312 1265 aa12.15□□□□□ -0.46
USB1-216ENST00000624720 LRRIQ1Q96JM4 1722 aa12.14□□□□□ -0.47
USB1-216ENST00000624720 PATL2C9JE40 543 aaKnown RBP12.14□□□□□ -0.47
USB1-216ENST00000624720 TMEM51Q9NW97 253 aa12.14□□□□□ -0.47
USB1-216ENST00000624720 MYOM3Q5VTT5 1437 aa12.14□□□□□ -0.47
USB1-216ENST00000624720 SETD5Q9C0A6 1442 aa12.14□□□□□ -0.47
USB1-216ENST00000624720 HNRNPMP52272 730 aaKnown RBP eCLIP12.13□□□□□ -0.47
USB1-216ENST00000624720 GRIPAP1Q4V328 841 aa12.13□□□□□ -0.47
USB1-216ENST00000624720 FAM43BQ6ZT52 329 aaPredicted RBP12.13□□□□□ -0.47
USB1-216ENST00000624720 PTMAP06454 111 aaKnown RBP12.13□□□□□ -0.47
USB1-216ENST00000624720 VGLL3A8MV65 326 aa12.12□□□□□ -0.47
USB1-216ENST00000624720 PLCD4Q9BRC7 762 aa12.12□□□□□ -0.47
USB1-216ENST00000624720 PDCL3Q9H2J4 239 aa12.12□□□□□ -0.47
USB1-216ENST00000624720 PLCB2Q00722 1185 aa12.12□□□□□ -0.47
USB1-216ENST00000624720 CFAP43Q8NDM7 1665 aa12.11□□□□□ -0.47
USB1-216ENST00000624720 HECW1Q76N89 1606 aa12.11□□□□□ -0.47
USB1-216ENST00000624720 CLGNO14967 610 aa12.1□□□□□ -0.47
USB1-216ENST00000624720 MAP3K1Q13233 1512 aa12.09□□□□□ -0.47
USB1-216ENST00000624720 IRX3P78415 501 aaPredicted RBP12.09□□□□□ -0.47
USB1-216ENST00000624720 VGFO15240 615 aaPredicted RBP12.08□□□□□ -0.47
USB1-216ENST00000624720 CCDC18Q5T9S5 1454 aa12.08□□□□□ -0.48
USB1-216ENST00000624720 PUS7Q96PZ0 661 aaKnown RBP12.08□□□□□ -0.48
USB1-216ENST00000624720 GSE1Q14687 1217 aa12.07□□□□□ -0.48
USB1-216ENST00000624720 EHBP1L1Q8N3D4 1523 aa12.07□□□□□ -0.48
USB1-216ENST00000624720 ATP10BO94823 1461 aa12.07□□□□□ -0.48
USB1-216ENST00000624720 RAPGEF6Q8TEU7 1601 aa12.07□□□□□ -0.48
USB1-216ENST00000624720 ZBTB47Q9UFB7 747 aaPredicted RBP12.06□□□□□ -0.48
USB1-216ENST00000624720 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.06□□□□□ -0.48
USB1-216ENST00000624720 HDAC5Q9UQL6 1122 aa12.05□□□□□ -0.48
USB1-216ENST00000624720 PTMSP20962 102 aa12.04□□□□□ -0.48
USB1-216ENST00000624720 CYB5RLQ6IPT4 315 aa12.04□□□□□ -0.48
USB1-216ENST00000624720 PSMD1Q99460 953 aa12.04□□□□□ -0.48
USB1-216ENST00000624720 SUPT6HQ7KZ85 1726 aaKnown RBP12.04□□□□□ -0.48
USB1-216ENST00000624720 TROQ12816 1431 aaPredicted RBP12.03□□□□□ -0.48
USB1-216ENST00000624720 MCCP23508 829 aa12.03□□□□□ -0.48
USB1-216ENST00000624720 IPO9Q96P70 1041 aaKnown RBP12.03□□□□□ -0.48
USB1-216ENST00000624720 PNNQ9H307 717 aaKnown RBP12.03□□□□□ -0.48
USB1-216ENST00000624720 ZNF622Q969S3 477 aaKnown RBP eCLIP12.02□□□□□ -0.48
USB1-216ENST00000624720 KIF14Q15058 1648 aa12.02□□□□□ -0.49
USB1-216ENST00000624720 APPP05067 770 aa12.02□□□□□ -0.49
USB1-216ENST00000624720 MMP14P50281 582 aa12.02□□□□□ -0.49
USB1-216ENST00000624720 ZHX1Q9UKY1 873 aaPredicted RBP12.02□□□□□ -0.49
USB1-216ENST00000624720 PTPN23Q9H3S7 1636 aa12.02□□□□□ -0.49
USB1-216ENST00000624720 UACAQ9BZF9 1416 aa12.02□□□□□ -0.49
USB1-216ENST00000624720 SLC4A1APQ9BWU0 796 aaKnown RBP12.01□□□□□ -0.49
USB1-216ENST00000624720 MAPK8IP2Q13387 824 aaPredicted RBP12.01□□□□□ -0.49
USB1-216ENST00000624720 SLC52A1Q9NWF4 448 aa12.01□□□□□ -0.49
USB1-216ENST00000624720 NAIPQ13075 1403 aa12□□□□□ -0.49
USB1-216ENST00000624720 TSPY4P0CV99 314 aa12□□□□□ -0.49
USB1-216ENST00000624720 TSPY10P0CW01 314 aa12□□□□□ -0.49
USB1-216ENST00000624720 DDRGK1Q96HY6 314 aa12□□□□□ -0.49
USB1-216ENST00000624720 MYCNP04198 464 aaPredicted RBP11.99□□□□□ -0.49
USB1-216ENST00000624720 ANP32AP39687 249 aaKnown RBP11.99□□□□□ -0.49
USB1-216ENST00000624720 SMAP1Q8IYB5 467 aaPredicted RBP11.99□□□□□ -0.49
USB1-216ENST00000624720 RRAGDQ9NQL2 400 aaPredicted RBP11.99□□□□□ -0.49
USB1-216ENST00000624720 ARID3AQ99856 593 aa11.98□□□□□ -0.49
USB1-216ENST00000624720 ANP32BQ92688 251 aaKnown RBP11.98□□□□□ -0.49
USB1-216ENST00000624720 MPHOSPH9Q99550 1183 aa11.98□□□□□ -0.49
USB1-216ENST00000624720 GPATCH8Q9UKJ3 1502 aaKnown RBP11.98□□□□□ -0.49
USB1-216ENST00000624720 ABCC5O15440 1437 aa11.97□□□□□ -0.49
USB1-216ENST00000624720 MAPKBP1O60336 1514 aa11.97□□□□□ -0.49
USB1-216ENST00000624720 SOX12O15370 315 aa11.96□□□□□ -0.49
USB1-216ENST00000624720 NPM1P06748 294 aaKnown RBP eCLIP11.96□□□□□ -0.49
USB1-216ENST00000624720 PPP4R3BQ5MIZ7 849 aa11.96□□□□□ -0.49
USB1-216ENST00000624720 DAPK1P53355 1430 aa11.96□□□□□ -0.49
USB1-216ENST00000624720 UHRF1BP1LA0JNW5 1464 aa11.96□□□□□ -0.5
USB1-216ENST00000624720 AFAP1Q8N556 730 aa11.96□□□□□ -0.5
USB1-216ENST00000624720 TONSLQ96HA7 1378 aa11.95□□□□□ -0.5
USB1-216ENST00000624720 OS9Q13438 667 aaPredicted RBP11.95□□□□□ -0.5
USB1-216ENST00000624720 HFM1A2PYH4 1435 aa11.95□□□□□ -0.5
USB1-216ENST00000624720 ZNF526Q8TF50 670 aaPredicted RBP11.95□□□□□ -0.5
USB1-216ENST00000624720 PRDM16Q9HAZ2 1276 aa11.95□□□□□ -0.5
USB1-216ENST00000624720 KDM6BO15054 1643 aa11.95□□□□□ -0.5
USB1-216ENST00000624720 PHF14O94880 888 aa11.94□□□□□ -0.5
USB1-216ENST00000624720 AXDND1Q5T1B0 1012 aaPredicted RBP11.94□□□□□ -0.5
USB1-216ENST00000624720 SENP3Q9H4L4 574 aaPredicted RBP11.94□□□□□ -0.5
USB1-216ENST00000624720 CAMSAP2Q08AD1 1489 aa11.94□□□□□ -0.5
USB1-216ENST00000624720 ADCY10Q96PN6 1610 aa11.94□□□□□ -0.5
USB1-216ENST00000624720 CERS3Q8IU89 383 aa11.94□□□□□ -0.5
USB1-216ENST00000624720 ABCA8O94911 1581 aa11.93□□□□□ -0.5
USB1-216ENST00000624720 PKD2Q13563 968 aa11.92□□□□□ -0.5
USB1-216ENST00000624720 UTP14CQ5TAP6 766 aaKnown RBP11.92□□□□□ -0.5
USB1-216ENST00000624720 KDM2AQ9Y2K7 1162 aa11.92□□□□□ -0.5
USB1-216ENST00000624720 MIA2Q96PC5 1412 aa11.92□□□□□ -0.5
USB1-216ENST00000624720 PSEN1P49768 467 aa11.91□□□□□ -0.5
USB1-216ENST00000624720 FRAT1Q92837 279 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms