RNA–Protein interactions for RNA: ENST00000613548.1

PCDH8-203, Transcript of protocadherin 8, humanhuman

TSL 2

Gene PCDH8, Length 744 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH8-203ENST00000613548 PTPRMP28827 1452 aa23.56■■□□□ 1.36
PCDH8-203ENST00000613548 ANKRD30AQ9BXX3 1397 aa23.55■■□□□ 1.36
PCDH8-203ENST00000613548 KDM5DQ9BY66 1539 aa23.54■■□□□ 1.36
PCDH8-203ENST00000613548 ROCK1Q13464 1354 aa23.53■■□□□ 1.36
PCDH8-203ENST00000613548 UNC13BO14795 1591 aa23.53■■□□□ 1.36
PCDH8-203ENST00000613548 CAMSAP1Q5T5Y3 1602 aa23.51■■□□□ 1.35
PCDH8-203ENST00000613548 CNTLNQ9NXG0 1405 aa23.5■■□□□ 1.35
PCDH8-203ENST00000613548 VWDEQ8N2E2 1590 aa23.48■■□□□ 1.35
PCDH8-203ENST00000613548 ABCC3O15438 1527 aa23.48■■□□□ 1.35
PCDH8-203ENST00000613548 PREX1Q8TCU6 1659 aa23.48■■□□□ 1.35
PCDH8-203ENST00000613548 MLECQ14165 292 aa23.47■■□□□ 1.35
PCDH8-203ENST00000613548 CHIC2Q9UKJ5 165 aa23.45■■□□□ 1.34
PCDH8-203ENST00000613548 ANKRD50Q9ULJ7 1429 aa23.43■■□□□ 1.34
PCDH8-203ENST00000613548 IQGAP3Q86VI3 1631 aa23.42■■□□□ 1.34
PCDH8-203ENST00000613548 RRP7BPQ9NSQ0 103 aa23.41■■□□□ 1.34
PCDH8-203ENST00000613548 SETD1BQ9UPS6 1966 aaKnown RBP23.41■■□□□ 1.34
PCDH8-203ENST00000613548 KIF3BO15066 747 aa23.4■■□□□ 1.34
PCDH8-203ENST00000613548 TET3O43151 1660 aa23.4■■□□□ 1.34
PCDH8-203ENST00000613548 ZNF142P52746 1687 aaPredicted RBP23.4■■□□□ 1.34
PCDH8-203ENST00000613548 MYO3AQ8NEV4 1616 aa23.4■■□□□ 1.34
PCDH8-203ENST00000613548 LMTK2Q8IWU2 1503 aa23.38■■□□□ 1.33
PCDH8-203ENST00000613548 HFM1A2PYH4 1435 aa23.38■■□□□ 1.33
PCDH8-203ENST00000613548 EFCAB6Q5THR3 1501 aa23.38■■□□□ 1.33
PCDH8-203ENST00000613548 NAIPQ13075 1403 aa23.37■■□□□ 1.33
PCDH8-203ENST00000613548 ITGAEP38570 1179 aa23.36■■□□□ 1.33
PCDH8-203ENST00000613548 PZPP20742 1482 aa23.36■■□□□ 1.33
PCDH8-203ENST00000613548 CFAP65Q6ZU64 1925 aaKnown RBP23.35■■□□□ 1.33
PCDH8-203ENST00000613548 GGT6Q6P531 493 aa23.34■■□□□ 1.33
PCDH8-203ENST00000613548 PPP6R1Q9UPN7 881 aa23.34■■□□□ 1.33
PCDH8-203ENST00000613548 NPATQ14207 1427 aa23.32■■□□□ 1.32
PCDH8-203ENST00000613548 SPATA31D1Q6ZQQ2 1576 aa23.31■■□□□ 1.32
PCDH8-203ENST00000613548 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
PCDH8-203ENST00000613548 E9PCH4 1651 aa23.31■■□□□ 1.32
PCDH8-203ENST00000613548 LMTK3Q96Q04 1460 aa23.3■■□□□ 1.32
PCDH8-203ENST00000613548 ZMYM3Q14202 1370 aa23.28■■□□□ 1.32
PCDH8-203ENST00000613548 ESF1Q9H501 851 aaKnown RBP23.27■■□□□ 1.32
PCDH8-203ENST00000613548 ARHGAP31Q2M1Z3 1444 aa23.25■■□□□ 1.31
PCDH8-203ENST00000613548 CEP170BQ9Y4F5 1589 aaPredicted RBP23.25■■□□□ 1.31
PCDH8-203ENST00000613548 KANK1Q14678 1352 aa23.25■■□□□ 1.31
PCDH8-203ENST00000613548 ERVK-7P63135 1459 aa23.24■■□□□ 1.31
PCDH8-203ENST00000613548 SPHKAPQ2M3C7 1700 aa23.23■■□□□ 1.31
PCDH8-203ENST00000613548 WASHC2CQ9Y4E1 1318 aa23.23■■□□□ 1.31
PCDH8-203ENST00000613548 CEBPAP49715 358 aaPredicted RBP23.22■■□□□ 1.31
PCDH8-203ENST00000613548 SYNMO15061 1565 aa23.22■■□□□ 1.31
PCDH8-203ENST00000613548 RPRD2Q5VT52 1461 aaKnown RBP23.21■■□□□ 1.31
PCDH8-203ENST00000613548 UHRF1BP1Q6BDS2 1440 aa23.19■■□□□ 1.3
PCDH8-203ENST00000613548 KDM5AP29375 1690 aaKnown RBP23.18■■□□□ 1.3
PCDH8-203ENST00000613548 PIK3C2BO00750 1634 aa23.18■■□□□ 1.3
PCDH8-203ENST00000613548 UBR1Q8IWV7 1749 aa23.17■■□□□ 1.3
PCDH8-203ENST00000613548 PLPPR3Q6T4P5 718 aa23.16■■□□□ 1.3
PCDH8-203ENST00000613548 POLR1AO95602 1720 aaPredicted RBP23.16■■□□□ 1.3
PCDH8-203ENST00000613548 MYO5BQ9ULV0 1848 aa23.15■■□□□ 1.3
PCDH8-203ENST00000613548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.15■■□□□ 1.3
PCDH8-203ENST00000613548 NLRP1Q9C000 1473 aa23.14■■□□□ 1.29
PCDH8-203ENST00000613548 TNRQ92752 1358 aa23.14■■□□□ 1.29
PCDH8-203ENST00000613548 STRCQ7RTU9 1775 aa23.13■■□□□ 1.29
PCDH8-203ENST00000613548 A2ML1A8K2U0 1454 aa23.12■■□□□ 1.29
PCDH8-203ENST00000613548 NOS1P29475 1434 aa23.12■■□□□ 1.29
PCDH8-203ENST00000613548 NUP155O75694 1391 aa23.11■■□□□ 1.29
PCDH8-203ENST00000613548 SETD5Q9C0A6 1442 aa23.1■■□□□ 1.29
PCDH8-203ENST00000613548 FBXO31Q5XUX0 539 aaPredicted RBP23.07■■□□□ 1.28
PCDH8-203ENST00000613548 ADGRB3O60242 1522 aa23.07■■□□□ 1.28
PCDH8-203ENST00000613548 TRPM2O94759 1503 aa23.06■■□□□ 1.28
PCDH8-203ENST00000613548 UGGT1Q9NYU2 1555 aa23.06■■□□□ 1.28
PCDH8-203ENST00000613548 RAB3GAP2Q9H2M9 1393 aa23.05■■□□□ 1.28
PCDH8-203ENST00000613548 PLA2R1Q13018 1463 aa23.04■■□□□ 1.28
PCDH8-203ENST00000613548 CLTCL1P53675 1640 aa23.04■■□□□ 1.28
PCDH8-203ENST00000613548 KIF1BO60333 1816 aa23.02■■□□□ 1.28
PCDH8-203ENST00000613548 TMEM131LA2VDJ0 1609 aa23.01■■□□□ 1.27
PCDH8-203ENST00000613548 NEURL4Q96JN8 1562 aa22.99■■□□□ 1.27
PCDH8-203ENST00000613548 PTPRTO14522 1441 aa22.99■■□□□ 1.27
PCDH8-203ENST00000613548 SLIT1O75093 1534 aa22.95■■□□□ 1.26
PCDH8-203ENST00000613548 HSPA2P54652 639 aa22.95■■□□□ 1.26
PCDH8-203ENST00000613548 ARHGAP23Q9P227 1491 aa22.93■■□□□ 1.26
PCDH8-203ENST00000613548 ACIN1Q9UKV3 1341 aaKnown RBP22.93■■□□□ 1.26
PCDH8-203ENST00000613548 IQGAP1P46940 1657 aa22.92■■□□□ 1.26
PCDH8-203ENST00000613548 TRIM52Q96A61 297 aa22.91■■□□□ 1.26
PCDH8-203ENST00000613548 IFT172Q9UG01 1749 aa22.88■■□□□ 1.25
PCDH8-203ENST00000613548 SLC4A1APQ9BWU0 796 aaKnown RBP22.86■■□□□ 1.25
PCDH8-203ENST00000613548 PPLO60437 1756 aa22.86■■□□□ 1.25
PCDH8-203ENST00000613548 TRIM26Q12899 539 aaPredicted RBP22.85■■□□□ 1.25
PCDH8-203ENST00000613548 HRCP23327 699 aa22.84■■□□□ 1.25
PCDH8-203ENST00000613548 PKD2Q13563 968 aa22.84■■□□□ 1.25
PCDH8-203ENST00000613548 SLC52A1Q9NWF4 448 aa22.83■■□□□ 1.25
PCDH8-203ENST00000613548 MED14O60244 1454 aa22.83■■□□□ 1.25
PCDH8-203ENST00000613548 SCAF11Q99590 1463 aaKnown RBP22.83■■□□□ 1.25
PCDH8-203ENST00000613548 IDI1Q13907 227 aa22.82■■□□□ 1.24
PCDH8-203ENST00000613548 ZFYVE9O95405 1425 aa22.82■■□□□ 1.24
PCDH8-203ENST00000613548 MPHOSPH9Q99550 1183 aa22.81■■□□□ 1.24
PCDH8-203ENST00000613548 NEXMIFQ5QGS0 1516 aa22.8■■□□□ 1.24
PCDH8-203ENST00000613548 TMEM2Q9UHN6 1383 aa22.79■■□□□ 1.24
PCDH8-203ENST00000613548 THEMISQ8N1K5 641 aaPredicted RBP22.77■■□□□ 1.24
PCDH8-203ENST00000613548 NRXN3Q9Y4C0 1643 aa22.76■■□□□ 1.23
PCDH8-203ENST00000613548 CCDC144AA2RUR9 1427 aa22.75■■□□□ 1.23
PCDH8-203ENST00000613548 FOXD1Q16676 465 aa22.74■■□□□ 1.23
PCDH8-203ENST00000613548 SETD1AO15047 1707 aaKnown RBP22.74■■□□□ 1.23
PCDH8-203ENST00000613548 NPHP4O75161 1426 aaPredicted RBP22.74■■□□□ 1.23
PCDH8-203ENST00000613548 STRCP1A6NGW2 1772 aa22.73■■□□□ 1.23
PCDH8-203ENST00000613548 RIMS2Q9UQ26 1411 aa22.73■■□□□ 1.23
PCDH8-203ENST00000613548 DIP2AQ14689 1571 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms