RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 KIF3BO15066 747 aa24.23■■□□□ 1.47
SSBP4-214ENST00000607020 ANKLE2Q86XL3 938 aa24.23■■□□□ 1.47
SSBP4-214ENST00000607020 CPS1P31327 1500 aa24.22■■□□□ 1.47
SSBP4-214ENST00000607020 THEMISQ8N1K5 641 aaPredicted RBP24.22■■□□□ 1.47
SSBP4-214ENST00000607020 ADGBQ8N7X0 1667 aa24.21■■□□□ 1.47
SSBP4-214ENST00000607020 SHANK2Q9UPX8 1470 aa24.21■■□□□ 1.47
SSBP4-214ENST00000607020 CEP162Q5TB80 1403 aa24.21■■□□□ 1.47
SSBP4-214ENST00000607020 PZPP20742 1482 aa24.2■■□□□ 1.47
SSBP4-214ENST00000607020 FAM135AQ9P2D6 1515 aa24.2■■□□□ 1.46
SSBP4-214ENST00000607020 WASHC2CQ9Y4E1 1318 aa24.19■■□□□ 1.46
SSBP4-214ENST00000607020 PIP4K2BP78356 416 aa24.19■■□□□ 1.46
SSBP4-214ENST00000607020 MIA2Q96PC5 1412 aa24.18■■□□□ 1.46
SSBP4-214ENST00000607020 TIAM1Q13009 1591 aa24.17■■□□□ 1.46
SSBP4-214ENST00000607020 SCAF1Q9H7N4 1312 aaKnown RBP24.16■■□□□ 1.46
SSBP4-214ENST00000607020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.16■■□□□ 1.468e-7■■■■□ 20.6
SSBP4-214ENST00000607020 NEURL4Q96JN8 1562 aa24.15■■□□□ 1.46
SSBP4-214ENST00000607020 MED14O60244 1454 aa24.14■■□□□ 1.46
SSBP4-214ENST00000607020 NLRP1Q9C000 1473 aa24.14■■□□□ 1.46
SSBP4-214ENST00000607020 EHBP1L1Q8N3D4 1523 aa24.14■■□□□ 1.45
SSBP4-214ENST00000607020 KDM5DQ9BY66 1539 aa24.14■■□□□ 1.45
SSBP4-214ENST00000607020 CCDC141Q6ZP82 1450 aa24.13■■□□□ 1.45
SSBP4-214ENST00000607020 NPHP4O75161 1426 aaPredicted RBP24.1■■□□□ 1.45
SSBP4-214ENST00000607020 MED1Q15648 1581 aaPredicted RBP24.09■■□□□ 1.45
SSBP4-214ENST00000607020 VWDEQ8N2E2 1590 aa24.08■■□□□ 1.45
SSBP4-214ENST00000607020 TSPY4P0CV99 314 aa24.08■■□□□ 1.45
SSBP4-214ENST00000607020 TSPY10P0CW01 314 aa24.08■■□□□ 1.45
SSBP4-214ENST00000607020 UGGT1Q9NYU2 1555 aa24.06■■□□□ 1.44
SSBP4-214ENST00000607020 CAMSAP2Q08AD1 1489 aa24.04■■□□□ 1.44
SSBP4-214ENST00000607020 NCOA2Q15596 1464 aa24.04■■□□□ 1.44
SSBP4-214ENST00000607020 DEPDC5O75140 1603 aa24.03■■□□□ 1.44
SSBP4-214ENST00000607020 POLR1AO95602 1720 aaPredicted RBP24.01■■□□□ 1.43
SSBP4-214ENST00000607020 ALKQ9UM73 1620 aa24.01■■□□□ 1.43
SSBP4-214ENST00000607020 PHF23Q9BUL5 403 aaPredicted RBP24■■□□□ 1.43
SSBP4-214ENST00000607020 ARHGEF5Q12774 1597 aa23.97■■□□□ 1.43
SSBP4-214ENST00000607020 LRRC7Q96NW7 1537 aa23.97■■□□□ 1.43
SSBP4-214ENST00000607020 ABCC3O15438 1527 aa23.93■■□□□ 1.42
SSBP4-214ENST00000607020 ERVK-7P63135 1459 aa23.92■■□□□ 1.42
SSBP4-214ENST00000607020 IQGAP1P46940 1657 aa23.89■■□□□ 1.42
SSBP4-214ENST00000607020 RNF17Q9BXT8 1623 aaKnown RBP23.89■■□□□ 1.42
SSBP4-214ENST00000607020 LTKP29376 864 aa23.88■■□□□ 1.41
SSBP4-214ENST00000607020 MAST1Q9Y2H9 1570 aa23.86■■□□□ 1.41
SSBP4-214ENST00000607020 TXNDC2Q86VQ3 553 aa23.86■■□□□ 1.41
SSBP4-214ENST00000607020 SCAF11Q99590 1463 aaKnown RBP23.86■■□□□ 1.41
SSBP4-214ENST00000607020 RGS17Q9UGC6 210 aaPredicted RBP23.85■■□□□ 1.41
SSBP4-214ENST00000607020 ARHGAP23Q9P227 1491 aa23.85■■□□□ 1.41
SSBP4-214ENST00000607020 ARHGAP31Q2M1Z3 1444 aa23.84■■□□□ 1.41
SSBP4-214ENST00000607020 SYNMO15061 1565 aa23.83■■□□□ 1.41
SSBP4-214ENST00000607020 LRRC9Q6ZRR7 1453 aa23.83■■□□□ 1.41
SSBP4-214ENST00000607020 ZC3H13Q5T200 1668 aaKnown RBP23.83■■□□□ 1.4
SSBP4-214ENST00000607020 EID1Q9Y6B2 187 aa23.82■■□□□ 1.4
SSBP4-214ENST00000607020 SLIT1O75093 1534 aa23.82■■□□□ 1.4
SSBP4-214ENST00000607020 STRCP1A6NGW2 1772 aa23.81■■□□□ 1.4
SSBP4-214ENST00000607020 EIF2AK4Q9P2K8 1649 aaKnown RBP23.81■■□□□ 1.4
SSBP4-214ENST00000607020 FAM135BQ49AJ0 1406 aa23.8■■□□□ 1.4
SSBP4-214ENST00000607020 SENP3Q9H4L4 574 aaPredicted RBP23.8■■□□□ 1.4
SSBP4-214ENST00000607020 MROH1Q8NDA8 1641 aa23.8■■□□□ 1.4
SSBP4-214ENST00000607020 MYOM3Q5VTT5 1437 aa23.78■■□□□ 1.4
SSBP4-214ENST00000607020 DUOX2Q9NRD8 1548 aa23.77■■□□□ 1.4
SSBP4-214ENST00000607020 KANK4Q5T7N3 995 aaPredicted RBP23.76■■□□□ 1.39
SSBP4-214ENST00000607020 TMEM2Q9UHN6 1383 aa23.76■■□□□ 1.39
SSBP4-214ENST00000607020 VPS8Q8N3P4 1428 aa23.75■■□□□ 1.39
SSBP4-214ENST00000607020 UBR1Q8IWV7 1749 aa23.73■■□□□ 1.39
SSBP4-214ENST00000607020 KCNA6P17658 529 aa23.73■■□□□ 1.39
SSBP4-214ENST00000607020 MAP3K1Q13233 1512 aa23.73■■□□□ 1.39
SSBP4-214ENST00000607020 KIF15Q9NS87 1388 aa23.72■■□□□ 1.39
SSBP4-214ENST00000607020 ERBINQ96RT1 1412 aa23.71■■□□□ 1.39
SSBP4-214ENST00000607020 TMEM94Q12767 1356 aa23.69■■□□□ 1.38
SSBP4-214ENST00000607020 IDI1Q13907 227 aa23.69■■□□□ 1.38
SSBP4-214ENST00000607020 RRP7BPQ9NSQ0 103 aa23.69■■□□□ 1.38
SSBP4-214ENST00000607020 PRDM15P57071 1507 aaPredicted RBP23.69■■□□□ 1.38
SSBP4-214ENST00000607020 STAG3Q9UJ98 1225 aa23.68■■□□□ 1.38
SSBP4-214ENST00000607020 ABCC5O15440 1437 aa23.67■■□□□ 1.38
SSBP4-214ENST00000607020 POTEAQ6S8J7 498 aa23.66■■□□□ 1.38
SSBP4-214ENST00000607020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.66■■□□□ 1.38
SSBP4-214ENST00000607020 KANK1Q14678 1352 aa23.65■■□□□ 1.38
SSBP4-214ENST00000607020 PROSER2Q86WR7 435 aaPredicted RBP23.65■■□□□ 1.38
SSBP4-214ENST00000607020 CEP152O94986 1710 aa23.62■■□□□ 1.37
SSBP4-214ENST00000607020 SLC26A8Q96RN1 970 aa23.62■■□□□ 1.37
SSBP4-214ENST00000607020 LMTK2Q8IWU2 1503 aa23.61■■□□□ 1.37
SSBP4-214ENST00000607020 EFCAB6Q5THR3 1501 aa23.6■■□□□ 1.37
SSBP4-214ENST00000607020 SLC52A1Q9NWF4 448 aa23.6■■□□□ 1.37
SSBP4-214ENST00000607020 TET3O43151 1660 aa23.6■■□□□ 1.37
SSBP4-214ENST00000607020 NOS1P29475 1434 aa23.59■■□□□ 1.37
SSBP4-214ENST00000607020 PIK3C2BO00750 1634 aa23.58■■□□□ 1.36
SSBP4-214ENST00000607020 XIRP1Q702N8 1843 aaKnown RBP23.57■■□□□ 1.36
SSBP4-214ENST00000607020 SLAIN2Q9P270 581 aa23.56■■□□□ 1.36
SSBP4-214ENST00000607020 KDM5AP29375 1690 aaKnown RBP23.56■■□□□ 1.36
SSBP4-214ENST00000607020 DAPK1P53355 1430 aa23.56■■□□□ 1.36
SSBP4-214ENST00000607020 ANKRD30AQ9BXX3 1397 aa23.55■■□□□ 1.36
SSBP4-214ENST00000607020 LOC105371045A0A1W2PR82 267 aa23.55■■□□□ 1.36
SSBP4-214ENST00000607020 RBM33Q96EV2 1170 aaKnown RBP23.55■■□□□ 1.36
SSBP4-214ENST00000607020 NKTRP30414 1462 aaKnown RBP23.55■■□□□ 1.36
SSBP4-214ENST00000607020 CFAP65Q6ZU64 1925 aaKnown RBP23.54■■□□□ 1.36
SSBP4-214ENST00000607020 MSH6P52701 1360 aa23.53■■□□□ 1.36
SSBP4-214ENST00000607020 JCADQ9P266 1359 aa23.51■■□□□ 1.35
SSBP4-214ENST00000607020 HDGFP51858 240 aaKnown RBP23.49■■□□□ 1.35
SSBP4-214ENST00000607020 CHIC2Q9UKJ5 165 aa23.49■■□□□ 1.35
SSBP4-214ENST00000607020 ROBO1Q9Y6N7 1651 aa23.48■■□□□ 1.35
SSBP4-214ENST00000607020 FGD6Q6ZV73 1430 aa23.48■■□□□ 1.35
SSBP4-214ENST00000607020 NCOA3Q9Y6Q9 1424 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms