RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 SETD5Q9C0A6 1442 aa30.04■■■□□ 2.4
SHKBP1-222ENST00000600320 DEPDC5O75140 1603 aa30■■■□□ 2.39
SHKBP1-222ENST00000600320 ADAMTSL3P82987 1691 aa29.98■■■□□ 2.39
SHKBP1-222ENST00000600320 UNC13BO14795 1591 aa29.98■■■□□ 2.39
SHKBP1-222ENST00000600320 PCGF6Q9BYE7 350 aa29.97■■■□□ 2.39
SHKBP1-222ENST00000600320 RAB3GAP2Q9H2M9 1393 aa29.97■■■□□ 2.39
SHKBP1-222ENST00000600320 PRDM15P57071 1507 aaPredicted RBP29.96■■■□□ 2.39
SHKBP1-222ENST00000600320 KDM4FA0A1W2PPD8 638 aa29.96■■■□□ 2.39
SHKBP1-222ENST00000600320 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.96■■■□□ 2.39
SHKBP1-222ENST00000600320 MADDQ8WXG6 1647 aa29.93■■■□□ 2.38
SHKBP1-222ENST00000600320 VWDEQ8N2E2 1590 aa29.91■■■□□ 2.38
SHKBP1-222ENST00000600320 FER1L4A9Z1Z3 1794 aa29.9■■■□□ 2.38
SHKBP1-222ENST00000600320 PPP6R1Q9UPN7 881 aa29.89■■■□□ 2.38
SHKBP1-222ENST00000600320 KDM5DQ9BY66 1539 aa29.89■■■□□ 2.38
SHKBP1-222ENST00000600320 ABCC3O15438 1527 aa29.88■■■□□ 2.37
SHKBP1-222ENST00000600320 CLTCQ00610 1675 aaKnown RBP29.87■■■□□ 2.37
SHKBP1-222ENST00000600320 CEP152O94986 1710 aa29.87■■■□□ 2.37
SHKBP1-222ENST00000600320 NUP155O75694 1391 aa29.87■■■□□ 2.37
SHKBP1-222ENST00000600320 WASHC2CQ9Y4E1 1318 aa29.86■■■□□ 2.37
SHKBP1-222ENST00000600320 KANK1Q14678 1352 aa29.86■■■□□ 2.37
SHKBP1-222ENST00000600320 RIMS1Q86UR5 1692 aaKnown RBP29.85■■■□□ 2.37
SHKBP1-222ENST00000600320 TRIM52Q96A61 297 aa29.85■■■□□ 2.37
SHKBP1-222ENST00000600320 FAM135AQ9P2D6 1515 aa29.85■■■□□ 2.37
SHKBP1-222ENST00000600320 IQGAP3Q86VI3 1631 aa29.83■■■□□ 2.37
SHKBP1-222ENST00000600320 ZC3H13Q5T200 1668 aaKnown RBP29.82■■■□□ 2.36
SHKBP1-222ENST00000600320 CNTLNQ9NXG0 1405 aa29.82■■■□□ 2.36
SHKBP1-222ENST00000600320 ESF1Q9H501 851 aaKnown RBP29.82■■■□□ 2.36
SHKBP1-222ENST00000600320 LMTK2Q8IWU2 1503 aa29.81■■■□□ 2.36
SHKBP1-222ENST00000600320 HRCP23327 699 aa29.81■■■□□ 2.36
SHKBP1-222ENST00000600320 PZPP20742 1482 aa29.8■■■□□ 2.36
SHKBP1-222ENST00000600320 MROH2AA6NES4 1674 aa29.78■■■□□ 2.36
SHKBP1-222ENST00000600320 CAMSAP1Q5T5Y3 1602 aa29.78■■■□□ 2.36
SHKBP1-222ENST00000600320 ZMYM3Q14202 1370 aa29.77■■■□□ 2.36
SHKBP1-222ENST00000600320 TET3O43151 1660 aa29.75■■■□□ 2.35
SHKBP1-222ENST00000600320 PTPRMP28827 1452 aa29.74■■■□□ 2.35
SHKBP1-222ENST00000600320 CEBPAP49715 358 aaPredicted RBP29.74■■■□□ 2.35
SHKBP1-222ENST00000600320 EFCAB6Q5THR3 1501 aa29.73■■■□□ 2.35
SHKBP1-222ENST00000600320 C3P01024 1663 aa29.72■■■□□ 2.35
SHKBP1-222ENST00000600320 ACIN1Q9UKV3 1341 aaKnown RBP29.71■■■□□ 2.35
SHKBP1-222ENST00000600320 PLPPR3Q6T4P5 718 aa29.71■■■□□ 2.35
SHKBP1-222ENST00000600320 NPATQ14207 1427 aa29.7■■■□□ 2.34
SHKBP1-222ENST00000600320 ARHGAP31Q2M1Z3 1444 aa29.7■■■□□ 2.34
SHKBP1-222ENST00000600320 MPHOSPH9Q99550 1183 aa29.69■■■□□ 2.34
SHKBP1-222ENST00000600320 SLC4A1APQ9BWU0 796 aaKnown RBP29.69■■■□□ 2.34
SHKBP1-222ENST00000600320 E9PCH4 1651 aa29.67■■■□□ 2.34
SHKBP1-222ENST00000600320 FBXO31Q5XUX0 539 aaPredicted RBP29.66■■■□□ 2.34
SHKBP1-222ENST00000600320 PKD2Q13563 968 aa29.64■■■□□ 2.34
SHKBP1-222ENST00000600320 CFAP65Q6ZU64 1925 aaKnown RBP29.61■■■□□ 2.33
SHKBP1-222ENST00000600320 ERVK-7P63135 1459 aa29.61■■■□□ 2.33
SHKBP1-222ENST00000600320 RPRD2Q5VT52 1461 aaKnown RBP29.61■■■□□ 2.33
SHKBP1-222ENST00000600320 FOXD1Q16676 465 aa29.6■■■□□ 2.33
SHKBP1-222ENST00000600320 PREX1Q8TCU6 1659 aa29.6■■■□□ 2.33
SHKBP1-222ENST00000600320 SPATA31D1Q6ZQQ2 1576 aa29.58■■■□□ 2.33
SHKBP1-222ENST00000600320 NOS1P29475 1434 aa29.56■■■□□ 2.32
SHKBP1-222ENST00000600320 DHX57Q6P158 1386 aaKnown RBP29.54■■■□□ 2.32
SHKBP1-222ENST00000600320 TNRQ92752 1358 aa29.52■■■□□ 2.32
SHKBP1-222ENST00000600320 SYNMO15061 1565 aa29.52■■■□□ 2.32
SHKBP1-222ENST00000600320 PLA2R1Q13018 1463 aa29.52■■■□□ 2.32
SHKBP1-222ENST00000600320 PTPRTO14522 1441 aa29.51■■■□□ 2.31
SHKBP1-222ENST00000600320 SPHKAPQ2M3C7 1700 aa29.5■■■□□ 2.31
SHKBP1-222ENST00000600320 UGGT1Q9NYU2 1555 aa29.46■■■□□ 2.31
SHKBP1-222ENST00000600320 TRPM2O94759 1503 aa29.45■■■□□ 2.3
SHKBP1-222ENST00000600320 MYO3AQ8NEV4 1616 aa29.43■■■□□ 2.3
SHKBP1-222ENST00000600320 SETD1BQ9UPS6 1966 aaKnown RBP29.43■■■□□ 2.3
SHKBP1-222ENST00000600320 ANKRD30BQ9BXX2 1392 aa29.42■■■□□ 2.3
SHKBP1-222ENST00000600320 PIK3C2BO00750 1634 aa29.41■■■□□ 2.3
SHKBP1-222ENST00000600320 IDI1Q13907 227 aa29.4■■■□□ 2.3
SHKBP1-222ENST00000600320 CLTCL1P53675 1640 aa29.39■■■□□ 2.3
SHKBP1-222ENST00000600320 NLRP1Q9C000 1473 aa29.38■■■□□ 2.29
SHKBP1-222ENST00000600320 UHRF1BP1Q6BDS2 1440 aa29.37■■■□□ 2.29
SHKBP1-222ENST00000600320 SLC52A1Q9NWF4 448 aa29.36■■■□□ 2.29
SHKBP1-222ENST00000600320 CEP170BQ9Y4F5 1589 aaPredicted RBP29.35■■■□□ 2.29
SHKBP1-222ENST00000600320 A2ML1A8K2U0 1454 aa29.34■■■□□ 2.29
SHKBP1-222ENST00000600320 ZNF142P52746 1687 aaPredicted RBP29.33■■■□□ 2.29
SHKBP1-222ENST00000600320 CCDC144AA2RUR9 1427 aa29.32■■■□□ 2.28
SHKBP1-222ENST00000600320 LMTK3Q96Q04 1460 aa29.3■■■□□ 2.28
SHKBP1-222ENST00000600320 ADGRB3O60242 1522 aa29.28■■■□□ 2.28
SHKBP1-222ENST00000600320 UBR1Q8IWV7 1749 aa29.28■■■□□ 2.28
SHKBP1-222ENST00000600320 TMEM131LA2VDJ0 1609 aa29.27■■■□□ 2.28
SHKBP1-222ENST00000600320 CHGAP10645 457 aaKnown RBP29.26■■■□□ 2.27
SHKBP1-222ENST00000600320 SIN3AQ96ST3 1273 aa29.24■■■□□ 2.27
SHKBP1-222ENST00000600320 MYO5BQ9ULV0 1848 aa29.24■■■□□ 2.27
SHKBP1-222ENST00000600320 STAG3Q9UJ98 1225 aa29.23■■■□□ 2.27
SHKBP1-222ENST00000600320 KIF1BO60333 1816 aa29.22■■■□□ 2.27
SHKBP1-222ENST00000600320 CCER1Q8TC90 406 aaPredicted RBP29.22■■■□□ 2.27
SHKBP1-222ENST00000600320 KDM5AP29375 1690 aaKnown RBP29.21■■■□□ 2.27
SHKBP1-222ENST00000600320 HSPA2P54652 639 aa29.21■■■□□ 2.27
SHKBP1-222ENST00000600320 SPATA31E1Q6ZUB1 1445 aa29.2■■■□□ 2.27
SHKBP1-222ENST00000600320 THEMISQ8N1K5 641 aaPredicted RBP29.17■■■□□ 2.26
SHKBP1-222ENST00000600320 NEUROD1Q13562 356 aa29.15■■■□□ 2.26
SHKBP1-222ENST00000600320 TMEM2Q9UHN6 1383 aa29.13■■■□□ 2.25
SHKBP1-222ENST00000600320 NEURL4Q96JN8 1562 aa29.13■■■□□ 2.25
SHKBP1-222ENST00000600320 ARHGAP23Q9P227 1491 aa29.13■■■□□ 2.25
SHKBP1-222ENST00000600320 RGL3Q3MIN7 710 aa29.13■■■□□ 2.25
SHKBP1-222ENST00000600320 SLIT1O75093 1534 aa29.12■■■□□ 2.25
SHKBP1-222ENST00000600320 ILDR1Q86SU0 546 aaPredicted RBP29.12■■■□□ 2.25
SHKBP1-222ENST00000600320 CLSPNQ9HAW4 1339 aa29.12■■■□□ 2.25
SHKBP1-222ENST00000600320 ZNF326Q5BKZ1 582 aaKnown RBP29.11■■■□□ 2.25
SHKBP1-222ENST00000600320 ZFYVE9O95405 1425 aa29.1■■■□□ 2.25
SHKBP1-222ENST00000600320 RIMS2Q9UQ26 1411 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms