RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 NUP155O75694 1391 aa22.7■■□□□ 1.22
UPF1-206ENST00000598471 REREQ9P2R6 1566 aa22.68■■□□□ 1.22
UPF1-206ENST00000598471 KDM4FA0A1W2PPD8 638 aa22.68■■□□□ 1.22
UPF1-206ENST00000598471 KIF3BO15066 747 aa22.68■■□□□ 1.22
UPF1-206ENST00000598471 DEPDC5O75140 1603 aa22.67■■□□□ 1.22
UPF1-206ENST00000598471 PZPP20742 1482 aa22.66■■□□□ 1.22
UPF1-206ENST00000598471 KANK1Q14678 1352 aa22.66■■□□□ 1.22
UPF1-206ENST00000598471 BCORL1Q5H9F3 1711 aa22.66■■□□□ 1.22
UPF1-206ENST00000598471 MPHOSPH9Q99550 1183 aa22.66■■□□□ 1.22
UPF1-206ENST00000598471 SLC4A1APQ9BWU0 796 aaKnown RBP22.66■■□□□ 1.22
UPF1-206ENST00000598471 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.65■■□□□ 1.224e-7■■■□□ 15.6
UPF1-206ENST00000598471 RNF17Q9BXT8 1623 aaKnown RBP22.64■■□□□ 1.22
UPF1-206ENST00000598471 IQGAP3Q86VI3 1631 aa22.64■■□□□ 1.21
UPF1-206ENST00000598471 ZEB1P37275 1124 aaPredicted RBP22.63■■□□□ 1.21
UPF1-206ENST00000598471 PRDM15P57071 1507 aaPredicted RBP22.62■■□□□ 1.21
UPF1-206ENST00000598471 FAM135AQ9P2D6 1515 aa22.62■■□□□ 1.21
UPF1-206ENST00000598471 ARID4BQ4LE39 1312 aaPredicted RBP22.62■■□□□ 1.21
UPF1-206ENST00000598471 AGLP35573 1532 aa22.62■■□□□ 1.21
UPF1-206ENST00000598471 MROH1Q8NDA8 1641 aa22.57■■□□□ 1.2
UPF1-206ENST00000598471 VWDEQ8N2E2 1590 aa22.56■■□□□ 1.2
UPF1-206ENST00000598471 PKD2Q13563 968 aa22.55■■□□□ 1.2
UPF1-206ENST00000598471 GGT6Q6P531 493 aa22.55■■□□□ 1.2
UPF1-206ENST00000598471 MLECQ14165 292 aa22.54■■□□□ 1.2
UPF1-206ENST00000598471 TET3O43151 1660 aa22.52■■□□□ 1.2
UPF1-206ENST00000598471 LMTK2Q8IWU2 1503 aa22.52■■□□□ 1.19
UPF1-206ENST00000598471 ZC3H13Q5T200 1668 aaKnown RBP22.49■■□□□ 1.19
UPF1-206ENST00000598471 PPP6R1Q9UPN7 881 aa22.49■■□□□ 1.19
UPF1-206ENST00000598471 SIGLEC1Q9BZZ2 1709 aa22.48■■□□□ 1.19
UPF1-206ENST00000598471 FOXD1Q16676 465 aa22.48■■□□□ 1.19
UPF1-206ENST00000598471 AEBP2Q6ZN18 517 aaPredicted RBP22.48■■□□□ 1.19
UPF1-206ENST00000598471 WASHC2CQ9Y4E1 1318 aa22.48■■□□□ 1.19
UPF1-206ENST00000598471 ANKRD30BQ9BXX2 1392 aa22.48■■□□□ 1.19
UPF1-206ENST00000598471 ABCC3O15438 1527 aa22.47■■□□□ 1.19
UPF1-206ENST00000598471 EFCAB6Q5THR3 1501 aa22.46■■□□□ 1.19
UPF1-206ENST00000598471 CEP152O94986 1710 aa22.45■■□□□ 1.19
UPF1-206ENST00000598471 E9PCH4 1651 aa22.42■■□□□ 1.18
UPF1-206ENST00000598471 SIN3AQ96ST3 1273 aa22.42■■□□□ 1.18
UPF1-206ENST00000598471 RPRD2Q5VT52 1461 aaKnown RBP22.41■■□□□ 1.18
UPF1-206ENST00000598471 NEUROD1Q13562 356 aa22.41■■□□□ 1.18
UPF1-206ENST00000598471 CAMSAP1Q5T5Y3 1602 aa22.41■■□□□ 1.18
UPF1-206ENST00000598471 ESF1Q9H501 851 aaKnown RBP22.4■■□□□ 1.18
UPF1-206ENST00000598471 TIMELESSQ9UNS1 1208 aa22.39■■□□□ 1.17
UPF1-206ENST00000598471 ARHGAP31Q2M1Z3 1444 aa22.38■■□□□ 1.17
UPF1-206ENST00000598471 TONSLQ96HA7 1378 aa22.37■■□□□ 1.17
UPF1-206ENST00000598471 ADAMTSL3P82987 1691 aa22.36■■□□□ 1.17
UPF1-206ENST00000598471 CCDC144AA2RUR9 1427 aa22.36■■□□□ 1.17
UPF1-206ENST00000598471 SPHKAPQ2M3C7 1700 aa22.35■■□□□ 1.17
UPF1-206ENST00000598471 PTPRTO14522 1441 aa22.35■■□□□ 1.17
UPF1-206ENST00000598471 NPATQ14207 1427 aa22.35■■□□□ 1.17
UPF1-206ENST00000598471 PLPPR3Q6T4P5 718 aa22.35■■□□□ 1.17
UPF1-206ENST00000598471 TRPM2O94759 1503 aa22.35■■□□□ 1.17
UPF1-206ENST00000598471 CNTLNQ9NXG0 1405 aa22.34■■□□□ 1.17
UPF1-206ENST00000598471 CLTCQ00610 1675 aaKnown RBP22.33■■□□□ 1.17
UPF1-206ENST00000598471 PLA2R1Q13018 1463 aa22.33■■□□□ 1.16
UPF1-206ENST00000598471 CEBPAP49715 358 aaPredicted RBP22.32■■□□□ 1.16
UPF1-206ENST00000598471 MADDQ8WXG6 1647 aa22.29■■□□□ 1.16
UPF1-206ENST00000598471 PTPRMP28827 1452 aa22.28■■□□□ 1.16
UPF1-206ENST00000598471 MROH2AA6NES4 1674 aa22.27■■□□□ 1.16
UPF1-206ENST00000598471 NOS1P29475 1434 aa22.26■■□□□ 1.15
UPF1-206ENST00000598471 FER1L4A9Z1Z3 1794 aa22.25■■□□□ 1.15
UPF1-206ENST00000598471 CLTCL1P53675 1640 aa22.24■■□□□ 1.15
UPF1-206ENST00000598471 ZMYM3Q14202 1370 aa22.24■■□□□ 1.15
UPF1-206ENST00000598471 PREX1Q8TCU6 1659 aa22.23■■□□□ 1.15
UPF1-206ENST00000598471 ERVK-7P63135 1459 aa22.23■■□□□ 1.15
UPF1-206ENST00000598471 RIMS1Q86UR5 1692 aaKnown RBP22.22■■□□□ 1.15
UPF1-206ENST00000598471 L3MBTL2Q969R5 705 aa22.19■■□□□ 1.14
UPF1-206ENST00000598471 SYNMO15061 1565 aa22.19■■□□□ 1.14
UPF1-206ENST00000598471 SPATA31D1Q6ZQQ2 1576 aa22.19■■□□□ 1.14
UPF1-206ENST00000598471 NEURL4Q96JN8 1562 aa22.18■■□□□ 1.14
UPF1-206ENST00000598471 SLC52A1Q9NWF4 448 aa22.18■■□□□ 1.14
UPF1-206ENST00000598471 CFAP65Q6ZU64 1925 aaKnown RBP22.18■■□□□ 1.14
UPF1-206ENST00000598471 UGGT1Q9NYU2 1555 aa22.17■■□□□ 1.14
UPF1-206ENST00000598471 PPP1R15AO75807 674 aaPredicted RBP22.16■■□□□ 1.14
UPF1-206ENST00000598471 PIK3C2BO00750 1634 aa22.16■■□□□ 1.14
UPF1-206ENST00000598471 SPATA31E1Q6ZUB1 1445 aa22.15■■□□□ 1.14
UPF1-206ENST00000598471 KIF1BO60333 1816 aa22.15■■□□□ 1.14
UPF1-206ENST00000598471 FBXO31Q5XUX0 539 aaPredicted RBP22.15■■□□□ 1.14
UPF1-206ENST00000598471 TNRQ92752 1358 aa22.12■■□□□ 1.13
UPF1-206ENST00000598471 ADGRB3O60242 1522 aa22.12■■□□□ 1.13
UPF1-206ENST00000598471 C3P01024 1663 aa22.12■■□□□ 1.13
UPF1-206ENST00000598471 RGL3Q3MIN7 710 aa22.12■■□□□ 1.13
UPF1-206ENST00000598471 CHGAP10645 457 aaKnown RBP22.1■■□□□ 1.13
UPF1-206ENST00000598471 IDI1Q13907 227 aa22.08■■□□□ 1.13
UPF1-206ENST00000598471 DCAF11Q8TEB1 546 aa22.08■■□□□ 1.13
UPF1-206ENST00000598471 STAC3Q96MF2 364 aa22.08■■□□□ 1.13
UPF1-206ENST00000598471 ZNF326Q5BKZ1 582 aaKnown RBP22.06■■□□□ 1.12
UPF1-206ENST00000598471 NLRP1Q9C000 1473 aa22.05■■□□□ 1.12
UPF1-206ENST00000598471 STAG3Q9UJ98 1225 aa22.05■■□□□ 1.12
UPF1-206ENST00000598471 UHRF1BP1Q6BDS2 1440 aa22.05■■□□□ 1.12
UPF1-206ENST00000598471 RPGRIP1LQ68CZ1 1315 aa22.05■■□□□ 1.12
UPF1-206ENST00000598471 KDM2AQ9Y2K7 1162 aa22.04■■□□□ 1.12
UPF1-206ENST00000598471 HSPA2P54652 639 aa22.02■■□□□ 1.12
UPF1-206ENST00000598471 TMEM131LA2VDJ0 1609 aa22.02■■□□□ 1.11
UPF1-206ENST00000598471 MYOM2P54296 1465 aa22■■□□□ 1.11
UPF1-206ENST00000598471 PRAG1Q86YV5 1406 aa21.99■■□□□ 1.11
UPF1-206ENST00000598471 KDM5AP29375 1690 aaKnown RBP21.99■■□□□ 1.11
UPF1-206ENST00000598471 IFT172Q9UG01 1749 aa21.98■■□□□ 1.11
UPF1-206ENST00000598471 NBPF8Q3BBV2 869 aa21.97■■□□□ 1.11
UPF1-206ENST00000598471 SETD1BQ9UPS6 1966 aaKnown RBP21.97■■□□□ 1.11
UPF1-206ENST00000598471 A2ML1A8K2U0 1454 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms