RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 RTEL1-TNFRSF6BF6WH68 1400 aa16.5■□□□□ 0.23
TRIM28-210ENST00000597618 NEURL4Q96JN8 1562 aa16.5■□□□□ 0.23
TRIM28-210ENST00000597618 FAM135AQ9P2D6 1515 aa16.5■□□□□ 0.23
TRIM28-210ENST00000597618 POLR1AO95602 1720 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-210ENST00000597618 DHX29Q7Z478 1369 aaKnown RBP16.49■□□□□ 0.23
TRIM28-210ENST00000597618 PZPP20742 1482 aa16.48■□□□□ 0.23
TRIM28-210ENST00000597618 MBD5Q9P267 1494 aa16.48■□□□□ 0.23
TRIM28-210ENST00000597618 KDM5DQ9BY66 1539 aa16.47■□□□□ 0.23
TRIM28-210ENST00000597618 TIAM1Q13009 1591 aa16.46■□□□□ 0.23
TRIM28-210ENST00000597618 ZNF644Q9H582 1327 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-210ENST00000597618 ANKLE2Q86XL3 938 aa16.45■□□□□ 0.22
TRIM28-210ENST00000597618 VWDEQ8N2E2 1590 aa16.44■□□□□ 0.22
TRIM28-210ENST00000597618 NLRP1Q9C000 1473 aa16.44■□□□□ 0.22
TRIM28-210ENST00000597618 FBXO31Q5XUX0 539 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-210ENST00000597618 PHF23Q9BUL5 403 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-210ENST00000597618 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.43■□□□□ 0.22
TRIM28-210ENST00000597618 KIF3BO15066 747 aa16.43■□□□□ 0.22
TRIM28-210ENST00000597618 THEMISQ8N1K5 641 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-210ENST00000597618 EHBP1L1Q8N3D4 1523 aa16.43■□□□□ 0.22
TRIM28-210ENST00000597618 MED14O60244 1454 aa16.42■□□□□ 0.22
TRIM28-210ENST00000597618 NPHP4O75161 1426 aaPredicted RBP16.42■□□□□ 0.22
TRIM28-210ENST00000597618 WASHC2CQ9Y4E1 1318 aa16.42■□□□□ 0.22
TRIM28-210ENST00000597618 CCDC141Q6ZP82 1450 aa16.42■□□□□ 0.22
TRIM28-210ENST00000597618 CEP162Q5TB80 1403 aa16.41■□□□□ 0.22
TRIM28-210ENST00000597618 MIA2Q96PC5 1412 aa16.41■□□□□ 0.22
TRIM28-210ENST00000597618 UGGT1Q9NYU2 1555 aa16.41■□□□□ 0.22
TRIM28-210ENST00000597618 DEPDC5O75140 1603 aa16.41■□□□□ 0.22
TRIM28-210ENST00000597618 ALKQ9UM73 1620 aa16.39■□□□□ 0.21
TRIM28-210ENST00000597618 RSPH4AQ5TD94 716 aa16.37■□□□□ 0.21
TRIM28-210ENST00000597618 IQGAP1P46940 1657 aa16.36■□□□□ 0.21
TRIM28-210ENST00000597618 CAMSAP2Q08AD1 1489 aa16.35■□□□□ 0.21
TRIM28-210ENST00000597618 SYNMO15061 1565 aa16.34■□□□□ 0.21
TRIM28-210ENST00000597618 RNF17Q9BXT8 1623 aaKnown RBP16.34■□□□□ 0.21
TRIM28-210ENST00000597618 LRRC7Q96NW7 1537 aa16.34■□□□□ 0.21
TRIM28-210ENST00000597618 NCOA2Q15596 1464 aa16.31■□□□□ 0.2
TRIM28-210ENST00000597618 ARHGEF5Q12774 1597 aa16.3■□□□□ 0.2
TRIM28-210ENST00000597618 TSPY4P0CV99 314 aa16.3■□□□□ 0.2
TRIM28-210ENST00000597618 TSPY10P0CW01 314 aa16.3■□□□□ 0.2
TRIM28-210ENST00000597618 ZC3H13Q5T200 1668 aaKnown RBP16.3■□□□□ 0.2
TRIM28-210ENST00000597618 ABCC3O15438 1527 aa16.29■□□□□ 0.2
TRIM28-210ENST00000597618 SENP3Q9H4L4 574 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-210ENST00000597618 ERVK-7P63135 1459 aa16.29■□□□□ 0.2
TRIM28-210ENST00000597618 STRCP1A6NGW2 1772 aa16.28■□□□□ 0.2
TRIM28-210ENST00000597618 SCAF11Q99590 1463 aaKnown RBP16.26■□□□□ 0.19
TRIM28-210ENST00000597618 EIF2AK4Q9P2K8 1649 aaKnown RBP16.24■□□□□ 0.19
TRIM28-210ENST00000597618 MAST1Q9Y2H9 1570 aa16.23■□□□□ 0.19
TRIM28-210ENST00000597618 UBR1Q8IWV7 1749 aa16.22■□□□□ 0.19
TRIM28-210ENST00000597618 SLIT1O75093 1534 aa16.21■□□□□ 0.19
TRIM28-210ENST00000597618 MROH1Q8NDA8 1641 aa16.21■□□□□ 0.19
TRIM28-210ENST00000597618 RGS17Q9UGC6 210 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-210ENST00000597618 ARHGAP23Q9P227 1491 aa16.21■□□□□ 0.19
TRIM28-210ENST00000597618 TXNDC2Q86VQ3 553 aa16.19■□□□□ 0.18
TRIM28-210ENST00000597618 LTKP29376 864 aa16.18■□□□□ 0.18
TRIM28-210ENST00000597618 EID1Q9Y6B2 187 aa16.18■□□□□ 0.18
TRIM28-210ENST00000597618 FAM135BQ49AJ0 1406 aa16.18■□□□□ 0.18
TRIM28-210ENST00000597618 ARHGAP31Q2M1Z3 1444 aa16.17■□□□□ 0.18
TRIM28-210ENST00000597618 DUOX2Q9NRD8 1548 aa16.16■□□□□ 0.18
TRIM28-210ENST00000597618 CEP152O94986 1710 aa16.16■□□□□ 0.18
TRIM28-210ENST00000597618 LRRC9Q6ZRR7 1453 aa16.15■□□□□ 0.18
TRIM28-210ENST00000597618 PRDM15P57071 1507 aaPredicted RBP16.14■□□□□ 0.18
TRIM28-210ENST00000597618 TMEM2Q9UHN6 1383 aa16.13■□□□□ 0.17
TRIM28-210ENST00000597618 XIRP1Q702N8 1843 aaKnown RBP16.13■□□□□ 0.17
TRIM28-210ENST00000597618 TMEM94Q12767 1356 aa16.13■□□□□ 0.17
TRIM28-210ENST00000597618 MYOM3Q5VTT5 1437 aa16.12■□□□□ 0.17
TRIM28-210ENST00000597618 ERBINQ96RT1 1412 aa16.11■□□□□ 0.17
TRIM28-210ENST00000597618 POTEAQ6S8J7 498 aa16.11■□□□□ 0.17
TRIM28-210ENST00000597618 KIF15Q9NS87 1388 aa16.11■□□□□ 0.17
TRIM28-210ENST00000597618 PIK3C2BO00750 1634 aa16.1■□□□□ 0.17
TRIM28-210ENST00000597618 STAG3Q9UJ98 1225 aa16.1■□□□□ 0.17
TRIM28-210ENST00000597618 KCNA6P17658 529 aa16.09■□□□□ 0.17
TRIM28-210ENST00000597618 MAP3K1Q13233 1512 aa16.09■□□□□ 0.17
TRIM28-210ENST00000597618 EFCAB6Q5THR3 1501 aa16.09■□□□□ 0.17
TRIM28-210ENST00000597618 ROBO1Q9Y6N7 1651 aa16.08■□□□□ 0.17
TRIM28-210ENST00000597618 CFAP65Q6ZU64 1925 aaKnown RBP16.08■□□□□ 0.16
TRIM28-210ENST00000597618 VPS8Q8N3P4 1428 aa16.08■□□□□ 0.16
TRIM28-210ENST00000597618 KDM5AP29375 1690 aaKnown RBP16.08■□□□□ 0.16
TRIM28-210ENST00000597618 KANK1Q14678 1352 aa16.07■□□□□ 0.16
TRIM28-210ENST00000597618 NKTRP30414 1462 aaKnown RBP16.07■□□□□ 0.16
TRIM28-210ENST00000597618 PROSER2Q86WR7 435 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-210ENST00000597618 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.04■□□□□ 0.168e-9■■■□□ 15.8
TRIM28-210ENST00000597618 TET3O43151 1660 aa16.04■□□□□ 0.16
TRIM28-210ENST00000597618 NWD1Q149M9 1564 aa16.04■□□□□ 0.16
TRIM28-210ENST00000597618 LMTK2Q8IWU2 1503 aa16.04■□□□□ 0.16
TRIM28-210ENST00000597618 MSH6P52701 1360 aa16.03■□□□□ 0.16
TRIM28-210ENST00000597618 SLC26A8Q96RN1 970 aa16.03■□□□□ 0.16
TRIM28-210ENST00000597618 RRP7BPQ9NSQ0 103 aa16.03■□□□□ 0.16
TRIM28-210ENST00000597618 ABCC5O15440 1437 aa16.02■□□□□ 0.16
TRIM28-210ENST00000597618 JCADQ9P266 1359 aa16.02■□□□□ 0.16
TRIM28-210ENST00000597618 CROCC2H7BZ55 1655 aa16.02■□□□□ 0.16
TRIM28-210ENST00000597618 IDI1Q13907 227 aa16.02■□□□□ 0.16
TRIM28-210ENST00000597618 KANK4Q5T7N3 995 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-210ENST00000597618 ADGRB3O60242 1522 aa16.01■□□□□ 0.15
TRIM28-210ENST00000597618 RBM33Q96EV2 1170 aaKnown RBP16.01■□□□□ 0.15
TRIM28-210ENST00000597618 SLAIN2Q9P270 581 aa15.99■□□□□ 0.15
TRIM28-210ENST00000597618 NOS1P29475 1434 aa15.99■□□□□ 0.15
TRIM28-210ENST00000597618 SETD1AO15047 1707 aaKnown RBP15.98■□□□□ 0.15
TRIM28-210ENST00000597618 PHLPP1O60346 1717 aa15.98■□□□□ 0.15
TRIM28-210ENST00000597618 DAPK1P53355 1430 aa15.98■□□□□ 0.15
TRIM28-210ENST00000597618 BCANQ96GW7 911 aa15.97■□□□□ 0.15
TRIM28-210ENST00000597618 SLC52A1Q9NWF4 448 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms