RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 ALKQ9UM73 1620 aa22.54■■□□□ 1.2
SHKBP1-208ENST00000595726 ANKLE2Q86XL3 938 aa22.54■■□□□ 1.2
SHKBP1-208ENST00000595726 PLEKHH2Q8IVE3 1493 aa22.51■■□□□ 1.19
SHKBP1-208ENST00000595726 CCNB3Q8WWL7 1395 aa22.5■■□□□ 1.19
SHKBP1-208ENST00000595726 VWDEQ8N2E2 1590 aa22.5■■□□□ 1.19
SHKBP1-208ENST00000595726 POLR1AO95602 1720 aaPredicted RBP22.5■■□□□ 1.19
SHKBP1-208ENST00000595726 KIF3BO15066 747 aa22.49■■□□□ 1.19
SHKBP1-208ENST00000595726 RGS17Q9UGC6 210 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-208ENST00000595726 THEMISQ8N1K5 641 aaPredicted RBP22.48■■□□□ 1.19
SHKBP1-208ENST00000595726 FYCO1Q9BQS8 1478 aa22.47■■□□□ 1.19
SHKBP1-208ENST00000595726 DHX29Q7Z478 1369 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-208ENST00000595726 NPHP4O75161 1426 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-208ENST00000595726 ADGBQ8N7X0 1667 aa22.46■■□□□ 1.19
SHKBP1-208ENST00000595726 WASHC2CQ9Y4E1 1318 aa22.44■■□□□ 1.18
SHKBP1-208ENST00000595726 PZPP20742 1482 aa22.42■■□□□ 1.18
SHKBP1-208ENST00000595726 MBD5Q9P267 1494 aa22.42■■□□□ 1.18
SHKBP1-208ENST00000595726 MIA2Q96PC5 1412 aa22.42■■□□□ 1.18
SHKBP1-208ENST00000595726 MED14O60244 1454 aa22.41■■□□□ 1.18
SHKBP1-208ENST00000595726 LRRC7Q96NW7 1537 aa22.4■■□□□ 1.18
SHKBP1-208ENST00000595726 MTUS2Q5JR59 1369 aa22.38■■□□□ 1.17
SHKBP1-208ENST00000595726 UGGT1Q9NYU2 1555 aa22.38■■□□□ 1.17
SHKBP1-208ENST00000595726 RTEL1-TNFRSF6BF6WH68 1400 aa22.38■■□□□ 1.17
SHKBP1-208ENST00000595726 STRCP1A6NGW2 1772 aa22.38■■□□□ 1.17
SHKBP1-208ENST00000595726 KDM5DQ9BY66 1539 aa22.36■■□□□ 1.17
SHKBP1-208ENST00000595726 FAM135AQ9P2D6 1515 aa22.36■■□□□ 1.17
SHKBP1-208ENST00000595726 CHIC1Q5VXU3 224 aa22.36■■□□□ 1.17
SHKBP1-208ENST00000595726 NLRP1Q9C000 1473 aa22.35■■□□□ 1.17
SHKBP1-208ENST00000595726 DEPDC5O75140 1603 aa22.34■■□□□ 1.17
SHKBP1-208ENST00000595726 POTEAQ6S8J7 498 aa22.33■■□□□ 1.17
SHKBP1-208ENST00000595726 IQGAP1P46940 1657 aa22.33■■□□□ 1.16
SHKBP1-208ENST00000595726 TIAM1Q13009 1591 aa22.32■■□□□ 1.16
SHKBP1-208ENST00000595726 RNF17Q9BXT8 1623 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-208ENST00000595726 CCDC141Q6ZP82 1450 aa22.24■■□□□ 1.15
SHKBP1-208ENST00000595726 LTKP29376 864 aa22.24■■□□□ 1.15
SHKBP1-208ENST00000595726 SYNMO15061 1565 aa22.22■■□□□ 1.15
SHKBP1-208ENST00000595726 TXNDC2Q86VQ3 553 aa22.2■■□□□ 1.14
SHKBP1-208ENST00000595726 RSPH4AQ5TD94 716 aa22.19■■□□□ 1.14
SHKBP1-208ENST00000595726 CEP162Q5TB80 1403 aa22.19■■□□□ 1.14
SHKBP1-208ENST00000595726 CAMSAP2Q08AD1 1489 aa22.19■■□□□ 1.14
SHKBP1-208ENST00000595726 ZC3H13Q5T200 1668 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-208ENST00000595726 TSPY4P0CV99 314 aa22.18■■□□□ 1.14
SHKBP1-208ENST00000595726 TSPY10P0CW01 314 aa22.18■■□□□ 1.14
SHKBP1-208ENST00000595726 ABCC3O15438 1527 aa22.17■■□□□ 1.14
SHKBP1-208ENST00000595726 EHBP1L1Q8N3D4 1523 aa22.17■■□□□ 1.14
SHKBP1-208ENST00000595726 ERVK-7P63135 1459 aa22.17■■□□□ 1.14
SHKBP1-208ENST00000595726 SCAF11Q99590 1463 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-208ENST00000595726 RBM33Q96EV2 1170 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-208ENST00000595726 FAM135BQ49AJ0 1406 aa22.15■■□□□ 1.14
SHKBP1-208ENST00000595726 XIRP1Q702N8 1843 aaKnown RBP22.15■■□□□ 1.14
SHKBP1-208ENST00000595726 NCOA2Q15596 1464 aa22.15■■□□□ 1.14
SHKBP1-208ENST00000595726 CFAP65Q6ZU64 1925 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-208ENST00000595726 UBR1Q8IWV7 1749 aa22.11■■□□□ 1.13
SHKBP1-208ENST00000595726 TMEM94Q12767 1356 aa22.11■■□□□ 1.13
SHKBP1-208ENST00000595726 EID1Q9Y6B2 187 aa22.09■■□□□ 1.13
SHKBP1-208ENST00000595726 ARHGAP23Q9P227 1491 aa22.09■■□□□ 1.13
SHKBP1-208ENST00000595726 SETD1AO15047 1707 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-208ENST00000595726 SLIT1O75093 1534 aa22.06■■□□□ 1.12
SHKBP1-208ENST00000595726 PROSER2Q86WR7 435 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-208ENST00000595726 ARHGEF5Q12774 1597 aa22.06■■□□□ 1.12
SHKBP1-208ENST00000595726 SLC26A8Q96RN1 970 aa22.05■■□□□ 1.12
SHKBP1-208ENST00000595726 MROH1Q8NDA8 1641 aa22.05■■□□□ 1.12
SHKBP1-208ENST00000595726 SRCAPQ6ZRS2 3230 aa22.04■■□□□ 1.12
SHKBP1-208ENST00000595726 ROBO1Q9Y6N7 1651 aa22.04■■□□□ 1.12
SHKBP1-208ENST00000595726 KCNA6P17658 529 aa22.03■■□□□ 1.12
SHKBP1-208ENST00000595726 CEP152O94986 1710 aa22.03■■□□□ 1.12
SHKBP1-208ENST00000595726 TMEM2Q9UHN6 1383 aa22.01■■□□□ 1.11
SHKBP1-208ENST00000595726 STAG3Q9UJ98 1225 aa22.01■■□□□ 1.11
SHKBP1-208ENST00000595726 UPF1Q92900 1129 aaKnown RBP eCLIP21.99■■□□□ 1.11
SHKBP1-208ENST00000595726 MAP3K1Q13233 1512 aa21.98■■□□□ 1.11
SHKBP1-208ENST00000595726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.98■■□□□ 1.11
SHKBP1-208ENST00000595726 SLAIN2Q9P270 581 aa21.98■■□□□ 1.11
SHKBP1-208ENST00000595726 EIF2AK4Q9P2K8 1649 aaKnown RBP21.96■■□□□ 1.11
SHKBP1-208ENST00000595726 IDI1Q13907 227 aa21.96■■□□□ 1.11
SHKBP1-208ENST00000595726 MAST1Q9Y2H9 1570 aa21.95■■□□□ 1.11
SHKBP1-208ENST00000595726 PIK3C2BO00750 1634 aa21.95■■□□□ 1.1
SHKBP1-208ENST00000595726 TRIM52Q96A61 297 aa21.95■■□□□ 1.1
SHKBP1-208ENST00000595726 JCADQ9P266 1359 aa21.94■■□□□ 1.1
SHKBP1-208ENST00000595726 ARHGAP31Q2M1Z3 1444 aa21.94■■□□□ 1.1
SHKBP1-208ENST00000595726 RRP7BPQ9NSQ0 103 aa21.92■■□□□ 1.1
SHKBP1-208ENST00000595726 TET3O43151 1660 aa21.91■■□□□ 1.1
SHKBP1-208ENST00000595726 MSH6P52701 1360 aa21.91■■□□□ 1.1
SHKBP1-208ENST00000595726 BCANQ96GW7 911 aa21.91■■□□□ 1.1
SHKBP1-208ENST00000595726 PRDM15P57071 1507 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-208ENST00000595726 PHLPP1O60346 1717 aa21.9■■□□□ 1.1
SHKBP1-208ENST00000595726 DUOX2Q9NRD8 1548 aa21.9■■□□□ 1.1
SHKBP1-208ENST00000595726 LRRC9Q6ZRR7 1453 aa21.9■■□□□ 1.1
SHKBP1-208ENST00000595726 MEX3CQ5U5Q3 659 aaKnown RBP21.88■■□□□ 1.09
SHKBP1-208ENST00000595726 EFCAB6Q5THR3 1501 aa21.88■■□□□ 1.09
SHKBP1-208ENST00000595726 LRP6O75581 1613 aa21.88■■□□□ 1.09
SHKBP1-208ENST00000595726 KIF15Q9NS87 1388 aa21.87■■□□□ 1.09
SHKBP1-208ENST00000595726 KANK4Q5T7N3 995 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-208ENST00000595726 ZNF772Q68DY9 489 aaPredicted RBP21.85■■□□□ 1.09
SHKBP1-208ENST00000595726 NKTRP30414 1462 aaKnown RBP21.83■■□□□ 1.09
SHKBP1-208ENST00000595726 MYOM3Q5VTT5 1437 aa21.82■■□□□ 1.08
SHKBP1-208ENST00000595726 COL16A1Q07092 1604 aaPredicted RBP21.82■■□□□ 1.08
SHKBP1-208ENST00000595726 SPATA31A6Q5VVP1 1343 aa21.81■■□□□ 1.08
SHKBP1-208ENST00000595726 RXRBP28702 533 aa21.81■■□□□ 1.08
SHKBP1-208ENST00000595726 NWD1Q149M9 1564 aa21.81■■□□□ 1.08
SHKBP1-208ENST00000595726 KANK1Q14678 1352 aa21.8■■□□□ 1.08
SHKBP1-208ENST00000595726 ERBINQ96RT1 1412 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms