RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 KIF15Q9NS87 1388 aa17.02■□□□□ 0.31
SHKBP1-206ENST00000595523 ADGRL2O95490 1459 aa17.01■□□□□ 0.31
SHKBP1-206ENST00000595523 ESF1Q9H501 851 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-206ENST00000595523 CEP152O94986 1710 aa17.01■□□□□ 0.31
SHKBP1-206ENST00000595523 DEPDC5O75140 1603 aa17■□□□□ 0.31
SHKBP1-206ENST00000595523 ZC3H13Q5T200 1668 aaKnown RBP17■□□□□ 0.31
SHKBP1-206ENST00000595523 PTPRKQ15262 1439 aa16.99■□□□□ 0.31
SHKBP1-206ENST00000595523 FAM50AQ14320 339 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-206ENST00000595523 PPP6R1Q9UPN7 881 aa16.99■□□□□ 0.31
SHKBP1-206ENST00000595523 NCOA1Q15788 1441 aa16.98■□□□□ 0.31
SHKBP1-206ENST00000595523 ERBINQ96RT1 1412 aa16.98■□□□□ 0.31
SHKBP1-206ENST00000595523 MYO3AQ8NEV4 1616 aa16.98■□□□□ 0.31
SHKBP1-206ENST00000595523 NPATQ14207 1427 aa16.97■□□□□ 0.31
SHKBP1-206ENST00000595523 PRDM15P57071 1507 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-206ENST00000595523 RRP7BPQ9NSQ0 103 aa16.97■□□□□ 0.31
SHKBP1-206ENST00000595523 CHIC2Q9UKJ5 165 aa16.97■□□□□ 0.31
SHKBP1-206ENST00000595523 ABCC3O15438 1527 aa16.96■□□□□ 0.31
SHKBP1-206ENST00000595523 ANKRD30AQ9BXX3 1397 aa16.96■□□□□ 0.31
SHKBP1-206ENST00000595523 ZNF142P52746 1687 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-206ENST00000595523 UHRF1BP1Q6BDS2 1440 aa16.96■□□□□ 0.3
SHKBP1-206ENST00000595523 HSPA2P54652 639 aa16.95■□□□□ 0.3
SHKBP1-206ENST00000595523 CFAP65Q6ZU64 1925 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-206ENST00000595523 CAMSAP1Q5T5Y3 1602 aa16.95■□□□□ 0.3
SHKBP1-206ENST00000595523 STRCQ7RTU9 1775 aa16.94■□□□□ 0.3
SHKBP1-206ENST00000595523 PZPP20742 1482 aa16.93■□□□□ 0.3
SHKBP1-206ENST00000595523 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHKBP1-206ENST00000595523 RRBP1Q9P2E9 1410 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-206ENST00000595523 WASHC2CQ9Y4E1 1318 aa16.92■□□□□ 0.3
SHKBP1-206ENST00000595523 VWDEQ8N2E2 1590 aa16.91■□□□□ 0.3
SHKBP1-206ENST00000595523 CEP170BQ9Y4F5 1589 aaPredicted RBP16.89■□□□□ 0.3
SHKBP1-206ENST00000595523 ROCK1Q13464 1354 aa16.88■□□□□ 0.29
SHKBP1-206ENST00000595523 SPATA31D1Q6ZQQ2 1576 aa16.87■□□□□ 0.29
SHKBP1-206ENST00000595523 FBXO31Q5XUX0 539 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-206ENST00000595523 ANKRD50Q9ULJ7 1429 aa16.87■□□□□ 0.29
SHKBP1-206ENST00000595523 UNC13BO14795 1591 aa16.86■□□□□ 0.29
SHKBP1-206ENST00000595523 LMTK2Q8IWU2 1503 aa16.86■□□□□ 0.29
SHKBP1-206ENST00000595523 TNRQ92752 1358 aa16.84■□□□□ 0.29
SHKBP1-206ENST00000595523 ERVK-7P63135 1459 aa16.84■□□□□ 0.29
SHKBP1-206ENST00000595523 A2ML1A8K2U0 1454 aa16.83■□□□□ 0.28
SHKBP1-206ENST00000595523 GCC2Q8IWJ2 1684 aa16.82■□□□□ 0.28
SHKBP1-206ENST00000595523 ARHGAP31Q2M1Z3 1444 aa16.82■□□□□ 0.28
SHKBP1-206ENST00000595523 ITGAEP38570 1179 aa16.82■□□□□ 0.28
SHKBP1-206ENST00000595523 EFCAB6Q5THR3 1501 aa16.81■□□□□ 0.28
SHKBP1-206ENST00000595523 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.81■□□□□ 0.28
SHKBP1-206ENST00000595523 TET3O43151 1660 aa16.81■□□□□ 0.28
SHKBP1-206ENST00000595523 POLR1AO95602 1720 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-206ENST00000595523 KANK1Q14678 1352 aa16.79■□□□□ 0.28
SHKBP1-206ENST00000595523 IQGAP3Q86VI3 1631 aa16.79■□□□□ 0.28
SHKBP1-206ENST00000595523 NLRP1Q9C000 1473 aa16.79■□□□□ 0.28
SHKBP1-206ENST00000595523 UBR1Q8IWV7 1749 aa16.78■□□□□ 0.28
SHKBP1-206ENST00000595523 PLA2R1Q13018 1463 aa16.78■□□□□ 0.28
SHKBP1-206ENST00000595523 SYNMO15061 1565 aa16.77■□□□□ 0.27
SHKBP1-206ENST00000595523 E9PCH4 1651 aa16.76■□□□□ 0.27
SHKBP1-206ENST00000595523 UGGT1Q9NYU2 1555 aa16.76■□□□□ 0.27
SHKBP1-206ENST00000595523 PIK3C2BO00750 1634 aa16.74■□□□□ 0.27
SHKBP1-206ENST00000595523 NEURL4Q96JN8 1562 aa16.74■□□□□ 0.27
SHKBP1-206ENST00000595523 NAIPQ13075 1403 aa16.74■□□□□ 0.27
SHKBP1-206ENST00000595523 PTPRTO14522 1441 aa16.73■□□□□ 0.27
SHKBP1-206ENST00000595523 NOS1P29475 1434 aa16.71■□□□□ 0.27
SHKBP1-206ENST00000595523 RPRD2Q5VT52 1461 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-206ENST00000595523 KDM5AP29375 1690 aaKnown RBP16.71■□□□□ 0.27
SHKBP1-206ENST00000595523 NCKAP5LQ9HCH0 1330 aa16.7■□□□□ 0.26
SHKBP1-206ENST00000595523 HFM1A2PYH4 1435 aa16.7■□□□□ 0.26
SHKBP1-206ENST00000595523 MYO5BQ9ULV0 1848 aa16.7■□□□□ 0.26
SHKBP1-206ENST00000595523 DMRT2Q9Y5R5 561 aa16.68■□□□□ 0.26
SHKBP1-206ENST00000595523 NUP155O75694 1391 aa16.67■□□□□ 0.26
SHKBP1-206ENST00000595523 PKD2Q13563 968 aa16.66■□□□□ 0.26
SHKBP1-206ENST00000595523 IQGAP1P46940 1657 aa16.65■□□□□ 0.26
SHKBP1-206ENST00000595523 SPHKAPQ2M3C7 1700 aa16.65■□□□□ 0.26
SHKBP1-206ENST00000595523 THEMISQ8N1K5 641 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-206ENST00000595523 LTBP4Q8N2S1 1624 aa16.65■□□□□ 0.26
SHKBP1-206ENST00000595523 ADGRB3O60242 1522 aa16.65■□□□□ 0.26
SHKBP1-206ENST00000595523 SLIT1O75093 1534 aa16.65■□□□□ 0.26
SHKBP1-206ENST00000595523 MED14O60244 1454 aa16.64■□□□□ 0.25
SHKBP1-206ENST00000595523 ARHGAP23Q9P227 1491 aa16.64■□□□□ 0.25
SHKBP1-206ENST00000595523 IDI1Q13907 227 aa16.63■□□□□ 0.25
SHKBP1-206ENST00000595523 TMEM131LA2VDJ0 1609 aa16.62■□□□□ 0.25
SHKBP1-206ENST00000595523 ANKLE2Q86XL3 938 aa16.59■□□□□ 0.25
SHKBP1-206ENST00000595523 NPHP4O75161 1426 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-206ENST00000595523 SCAF11Q99590 1463 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-206ENST00000595523 TMEM2Q9UHN6 1383 aa16.58■□□□□ 0.24
SHKBP1-206ENST00000595523 STRCP1A6NGW2 1772 aa16.58■□□□□ 0.24
SHKBP1-206ENST00000595523 ZNF335Q9H4Z2 1342 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-206ENST00000595523 SLC52A1Q9NWF4 448 aa16.57■□□□□ 0.24
SHKBP1-206ENST00000595523 LTKP29376 864 aa16.56■□□□□ 0.24
SHKBP1-206ENST00000595523 ILDR1Q86SU0 546 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-206ENST00000595523 CERKQ8TCT0 537 aa16.56■□□□□ 0.24
SHKBP1-206ENST00000595523 CLTCL1P53675 1640 aa16.55■□□□□ 0.24
SHKBP1-206ENST00000595523 TRPM2O94759 1503 aa16.55■□□□□ 0.24
SHKBP1-206ENST00000595523 ZFYVE9O95405 1425 aa16.53■□□□□ 0.24
SHKBP1-206ENST00000595523 STAG3Q9UJ98 1225 aa16.53■□□□□ 0.24
SHKBP1-206ENST00000595523 KIF1BO60333 1816 aa16.52■□□□□ 0.24
SHKBP1-206ENST00000595523 TXNDC2Q86VQ3 553 aa16.51■□□□□ 0.23
SHKBP1-206ENST00000595523 TRIM52Q96A61 297 aa16.51■□□□□ 0.23
SHKBP1-206ENST00000595523 FBXO41Q8TF61 875 aa16.5■□□□□ 0.23
SHKBP1-206ENST00000595523 SETD5Q9C0A6 1442 aa16.5■□□□□ 0.23
SHKBP1-206ENST00000595523 IQSEC2Q5JU85 1478 aa16.49■□□□□ 0.23
SHKBP1-206ENST00000595523 RIMS2Q9UQ26 1411 aa16.48■□□□□ 0.23
SHKBP1-206ENST00000595523 EID1Q9Y6B2 187 aa16.48■□□□□ 0.23
SHKBP1-206ENST00000595523 CPS1P31327 1500 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms