RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ARHGEF12Q9NZN5 1544 aa17.85■□□□□ 0.45
SMAD4-211ENST00000590499 SAMD9LQ8IVG5 1584 aa17.84■□□□□ 0.45
SMAD4-211ENST00000590499 ZNF518AQ6AHZ1 1483 aa17.84■□□□□ 0.45
SMAD4-211ENST00000590499 YEATS2Q9ULM3 1422 aa17.84■□□□□ 0.45
SMAD4-211ENST00000590499 MAP3K1Q13233 1512 aa17.82■□□□□ 0.44
SMAD4-211ENST00000590499 SIGLEC1Q9BZZ2 1709 aa17.82■□□□□ 0.44
SMAD4-211ENST00000590499 SUPT6HQ7KZ85 1726 aaKnown RBP17.81■□□□□ 0.44
SMAD4-211ENST00000590499 ADAMTSL3P82987 1691 aa17.8■□□□□ 0.44
SMAD4-211ENST00000590499 CCNB3Q8WWL7 1395 aa17.8■□□□□ 0.44
SMAD4-211ENST00000590499 BCORL1Q5H9F3 1711 aa17.8■□□□□ 0.44
SMAD4-211ENST00000590499 TRAPPC8Q9Y2L5 1435 aa17.8■□□□□ 0.44
SMAD4-211ENST00000590499 HECW2Q9P2P5 1572 aa17.79■□□□□ 0.44
SMAD4-211ENST00000590499 NCOA2Q15596 1464 aa17.79■□□□□ 0.44
SMAD4-211ENST00000590499 LRRC9Q6ZRR7 1453 aa17.79■□□□□ 0.44
SMAD4-211ENST00000590499 POTEMA6NI47 508 aa17.78■□□□□ 0.44
SMAD4-211ENST00000590499 AFAP1Q8N556 730 aa17.78■□□□□ 0.44
SMAD4-211ENST00000590499 SYCP2Q9BX26 1530 aa17.77■□□□□ 0.44
SMAD4-211ENST00000590499 MLH3Q9UHC1 1453 aa17.77■□□□□ 0.44
SMAD4-211ENST00000590499 KIAA1107Q9UPP5 1409 aa17.76■□□□□ 0.43
SMAD4-211ENST00000590499 ATP10AO60312 1499 aa17.75■□□□□ 0.43
SMAD4-211ENST00000590499 PLEKHH2Q8IVE3 1493 aa17.75■□□□□ 0.43
SMAD4-211ENST00000590499 DIP2CQ9Y2E4 1556 aa17.75■□□□□ 0.43
SMAD4-211ENST00000590499 ASTLQ6HA08 431 aaPredicted RBP17.75■□□□□ 0.43
SMAD4-211ENST00000590499 CFDP1Q9UEE9 299 aaPredicted RBP17.75■□□□□ 0.43
SMAD4-211ENST00000590499 ABCA6Q8N139 1617 aa17.75■□□□□ 0.43
SMAD4-211ENST00000590499 C9orf84Q5VXU9 1444 aa17.74■□□□□ 0.43
SMAD4-211ENST00000590499 KIDINS220Q9ULH0 1771 aa17.74■□□□□ 0.43
SMAD4-211ENST00000590499 MS4A3Q96HJ5 214 aa17.74■□□□□ 0.43
SMAD4-211ENST00000590499 REREQ9P2R6 1566 aa17.73■□□□□ 0.43
SMAD4-211ENST00000590499 MADDQ8WXG6 1647 aa17.72■□□□□ 0.43
SMAD4-211ENST00000590499 POTEGQ6S5H5 508 aa17.72■□□□□ 0.43
SMAD4-211ENST00000590499 ZNF777Q9ULD5 760 aaPredicted RBP17.72■□□□□ 0.43
SMAD4-211ENST00000590499 KANK4Q5T7N3 995 aaPredicted RBP17.71■□□□□ 0.43
SMAD4-211ENST00000590499 METRNQ9UJH8 293 aa17.71■□□□□ 0.43
SMAD4-211ENST00000590499 ATMINO43313 823 aaPredicted RBP17.7■□□□□ 0.42
SMAD4-211ENST00000590499 ARID4BQ4LE39 1312 aaPredicted RBP17.7■□□□□ 0.42
SMAD4-211ENST00000590499 MBD5Q9P267 1494 aa17.69■□□□□ 0.42
SMAD4-211ENST00000590499 POTEJP0CG39 1038 aa17.69■□□□□ 0.42
SMAD4-211ENST00000590499 HNRNPMP52272 730 aaKnown RBP eCLIP17.69■□□□□ 0.42
SMAD4-211ENST00000590499 PROM2Q8N271 834 aa17.69■□□□□ 0.42
SMAD4-211ENST00000590499 INO80Q9ULG1 1556 aaPredicted RBP17.69■□□□□ 0.42
SMAD4-211ENST00000590499 ZNF644Q9H582 1327 aaPredicted RBP17.69■□□□□ 0.42
SMAD4-211ENST00000590499 PTPRMP28827 1452 aa17.68■□□□□ 0.42
SMAD4-211ENST00000590499 C7P10643 843 aa17.66■□□□□ 0.42
SMAD4-211ENST00000590499 CAMSAP2Q08AD1 1489 aa17.66■□□□□ 0.42
SMAD4-211ENST00000590499 ATP7AQ04656 1500 aa17.66■□□□□ 0.42
SMAD4-211ENST00000590499 RIMS1Q86UR5 1692 aaKnown RBP17.65■□□□□ 0.42
SMAD4-211ENST00000590499 SLC39A7Q92504 469 aa17.65■□□□□ 0.42
SMAD4-211ENST00000590499 AGLP35573 1532 aa17.65■□□□□ 0.42
SMAD4-211ENST00000590499 FER1L4A9Z1Z3 1794 aa17.64■□□□□ 0.41
SMAD4-211ENST00000590499 SPAG9O60271 1321 aaKnown RBP17.64■□□□□ 0.41
SMAD4-211ENST00000590499 MYOM3Q5VTT5 1437 aa17.62■□□□□ 0.41
SMAD4-211ENST00000590499 PLXNC1O60486 1568 aa17.62■□□□□ 0.41
SMAD4-211ENST00000590499 ARHGEF5Q12774 1597 aa17.62■□□□□ 0.41
SMAD4-211ENST00000590499 MYT1LQ9UL68 1186 aa17.61■□□□□ 0.41
SMAD4-211ENST00000590499 CCDC141Q6ZP82 1450 aa17.61■□□□□ 0.41
SMAD4-211ENST00000590499 MIA2Q96PC5 1412 aa17.6■□□□□ 0.41
SMAD4-211ENST00000590499 RTEL1-TNFRSF6BF6WH68 1400 aa17.59■□□□□ 0.41
SMAD4-211ENST00000590499 ADGBQ8N7X0 1667 aa17.58■□□□□ 0.41
SMAD4-211ENST00000590499 MLECQ14165 292 aa17.58■□□□□ 0.4
SMAD4-211ENST00000590499 A2MP01023 1474 aa17.56■□□□□ 0.4
SMAD4-211ENST00000590499 FKBP8Q14318 412 aa17.56■□□□□ 0.4
SMAD4-211ENST00000590499 RSPH4AQ5TD94 716 aa17.55■□□□□ 0.4
SMAD4-211ENST00000590499 TSPYL2Q9H2G4 693 aaPredicted RBP17.55■□□□□ 0.4
SMAD4-211ENST00000590499 MAST1Q9Y2H9 1570 aa17.53■□□□□ 0.4
SMAD4-211ENST00000590499 MAMSTRQ6ZN01 415 aa17.53■□□□□ 0.4
SMAD4-211ENST00000590499 CCDC61Q9Y6R9 512 aa17.53■□□□□ 0.4
SMAD4-211ENST00000590499 PTPN23Q9H3S7 1636 aa17.53■□□□□ 0.4
SMAD4-211ENST00000590499 ATN1P54259 1190 aaPredicted RBP17.51■□□□□ 0.39
SMAD4-211ENST00000590499 FGD6Q6ZV73 1430 aa17.51■□□□□ 0.39
SMAD4-211ENST00000590499 TCOF1Q13428 1488 aaKnown RBP17.5■□□□□ 0.39
SMAD4-211ENST00000590499 PCDH10Q9P2E7 1040 aa17.5■□□□□ 0.39
SMAD4-211ENST00000590499 CROCC2H7BZ55 1655 aa17.49■□□□□ 0.39
SMAD4-211ENST00000590499 DHX29Q7Z478 1369 aaKnown RBP17.49■□□□□ 0.39
SMAD4-211ENST00000590499 C3P01024 1663 aa17.48■□□□□ 0.39
SMAD4-211ENST00000590499 LCE2DQ5TA82 110 aaPredicted RBP17.48■□□□□ 0.39
SMAD4-211ENST00000590499 LMTK3Q96Q04 1460 aa17.48■□□□□ 0.39
SMAD4-211ENST00000590499 MROH2AA6NES4 1674 aa17.47■□□□□ 0.39
SMAD4-211ENST00000590499 CNTLNQ9NXG0 1405 aa17.47■□□□□ 0.39
SMAD4-211ENST00000590499 KIF12Q96FN5 646 aa17.46■□□□□ 0.39
SMAD4-211ENST00000590499 DNMT1P26358 1616 aaKnown RBP17.46■□□□□ 0.39
SMAD4-211ENST00000590499 SHANK2Q9UPX8 1470 aa17.45■□□□□ 0.38
SMAD4-211ENST00000590499 TSPY4P0CV99 314 aa17.45■□□□□ 0.38
SMAD4-211ENST00000590499 TSPY10P0CW01 314 aa17.45■□□□□ 0.38
SMAD4-211ENST00000590499 ABCC5O15440 1437 aa17.45■□□□□ 0.38
SMAD4-211ENST00000590499 SETD1BQ9UPS6 1966 aaKnown RBP17.44■□□□□ 0.38
SMAD4-211ENST00000590499 CLTCQ00610 1675 aaKnown RBP17.43■□□□□ 0.38
SMAD4-211ENST00000590499 CEBPAP49715 358 aaPredicted RBP17.43■□□□□ 0.38
SMAD4-211ENST00000590499 PREX1Q8TCU6 1659 aa17.42■□□□□ 0.38
SMAD4-211ENST00000590499 DAPK1P53355 1430 aa17.42■□□□□ 0.38
SMAD4-211ENST00000590499 EIF2AK4Q9P2K8 1649 aaKnown RBP17.4■□□□□ 0.38
SMAD4-211ENST00000590499 POTEFA5A3E0 1075 aa17.4■□□□□ 0.38
SMAD4-211ENST00000590499 BMP2KQ9NSY1 1161 aaPredicted RBP17.4■□□□□ 0.38
SMAD4-211ENST00000590499 FAM135AQ9P2D6 1515 aa17.4■□□□□ 0.38
SMAD4-211ENST00000590499 RNF17Q9BXT8 1623 aaKnown RBP17.39■□□□□ 0.38
SMAD4-211ENST00000590499 SCUBE2Q9NQ36 999 aa17.39■□□□□ 0.37
SMAD4-211ENST00000590499 GGT6Q6P531 493 aa17.38■□□□□ 0.37
SMAD4-211ENST00000590499 FAM163AQ96GL9 167 aaPredicted RBP17.38■□□□□ 0.37
SMAD4-211ENST00000590499 ESF1Q9H501 851 aaKnown RBP17.38■□□□□ 0.37
SMAD4-211ENST00000590499 TRPC6Q9Y210 931 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms