RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 CNTLNQ9NXG0 1405 aa30.56■■■□□ 2.48
ATG4D-208ENST00000588667 PPP6R1Q9UPN7 881 aa30.55■■■□□ 2.48
ATG4D-208ENST00000588667 FAM135AQ9P2D6 1515 aa30.54■■■□□ 2.48
ATG4D-208ENST00000588667 ESF1Q9H501 851 aaKnown RBP30.54■■■□□ 2.48
ATG4D-208ENST00000588667 MROH2AA6NES4 1674 aa30.53■■■□□ 2.48
ATG4D-208ENST00000588667 CLTCQ00610 1675 aaKnown RBP30.52■■■□□ 2.48
ATG4D-208ENST00000588667 TRIM26Q12899 539 aaPredicted RBP30.51■■■□□ 2.48
ATG4D-208ENST00000588667 MROH1Q8NDA8 1641 aa30.5■■■□□ 2.47
ATG4D-208ENST00000588667 ANKRD50Q9ULJ7 1429 aa30.5■■■□□ 2.47
ATG4D-208ENST00000588667 DEPDC5O75140 1603 aa30.5■■■□□ 2.47
ATG4D-208ENST00000588667 KDM5DQ9BY66 1539 aa30.49■■■□□ 2.47
ATG4D-208ENST00000588667 C3P01024 1663 aa30.48■■■□□ 2.47
ATG4D-208ENST00000588667 PRDM15P57071 1507 aaPredicted RBP30.47■■■□□ 2.47
ATG4D-208ENST00000588667 ZC3H13Q5T200 1668 aaKnown RBP30.46■■■□□ 2.47
ATG4D-208ENST00000588667 GCC2Q8IWJ2 1684 aa30.42■■■□□ 2.46
ATG4D-208ENST00000588667 ABCC3O15438 1527 aa30.41■■■□□ 2.46
ATG4D-208ENST00000588667 WASHC2CQ9Y4E1 1318 aa30.4■■■□□ 2.46
ATG4D-208ENST00000588667 ZMYM3Q14202 1370 aa30.4■■■□□ 2.46
ATG4D-208ENST00000588667 CEP152O94986 1710 aa30.39■■■□□ 2.46
ATG4D-208ENST00000588667 PLPPR3Q6T4P5 718 aa30.38■■■□□ 2.45
ATG4D-208ENST00000588667 PCGF6Q9BYE7 350 aa30.38■■■□□ 2.45
ATG4D-208ENST00000588667 CEBPAP49715 358 aaPredicted RBP30.37■■■□□ 2.45
ATG4D-208ENST00000588667 HFM1A2PYH4 1435 aa30.36■■■□□ 2.45
ATG4D-208ENST00000588667 NAIPQ13075 1403 aa30.36■■■□□ 2.45
ATG4D-208ENST00000588667 UNC13BO14795 1591 aa30.36■■■□□ 2.45
ATG4D-208ENST00000588667 SETD1BQ9UPS6 1966 aaKnown RBP30.35■■■□□ 2.45
ATG4D-208ENST00000588667 VWDEQ8N2E2 1590 aa30.35■■■□□ 2.45
ATG4D-208ENST00000588667 KANK1Q14678 1352 aa30.35■■■□□ 2.45
ATG4D-208ENST00000588667 CAMSAP1Q5T5Y3 1602 aa30.33■■■□□ 2.45
ATG4D-208ENST00000588667 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.33■■■□□ 2.45
ATG4D-208ENST00000588667 NPATQ14207 1427 aa30.31■■■□□ 2.44
ATG4D-208ENST00000588667 PZPP20742 1482 aa30.3■■■□□ 2.44
ATG4D-208ENST00000588667 LMTK2Q8IWU2 1503 aa30.29■■■□□ 2.44
ATG4D-208ENST00000588667 PREX1Q8TCU6 1659 aa30.28■■■□□ 2.44
ATG4D-208ENST00000588667 IQGAP3Q86VI3 1631 aa30.23■■■□□ 2.43
ATG4D-208ENST00000588667 ARHGAP31Q2M1Z3 1444 aa30.23■■■□□ 2.43
ATG4D-208ENST00000588667 EFCAB6Q5THR3 1501 aa30.21■■■□□ 2.43
ATG4D-208ENST00000588667 TET3O43151 1660 aa30.21■■■□□ 2.43
ATG4D-208ENST00000588667 LMTK3Q96Q04 1460 aa30.21■■■□□ 2.43
ATG4D-208ENST00000588667 CFAP65Q6ZU64 1925 aaKnown RBP30.19■■■□□ 2.42
ATG4D-208ENST00000588667 UHRF1BP1Q6BDS2 1440 aa30.18■■■□□ 2.42
ATG4D-208ENST00000588667 NUP155O75694 1391 aa30.17■■■□□ 2.42
ATG4D-208ENST00000588667 MYO3AQ8NEV4 1616 aa30.17■■■□□ 2.42
ATG4D-208ENST00000588667 SPATA31D1Q6ZQQ2 1576 aa30.16■■■□□ 2.42
ATG4D-208ENST00000588667 FBXO31Q5XUX0 539 aaPredicted RBP30.16■■■□□ 2.42
ATG4D-208ENST00000588667 ERVK-7P63135 1459 aa30.15■■■□□ 2.42
ATG4D-208ENST00000588667 TNRQ92752 1358 aa30.14■■■□□ 2.41
ATG4D-208ENST00000588667 RPRD2Q5VT52 1461 aaKnown RBP30.12■■■□□ 2.41
ATG4D-208ENST00000588667 ZNF142P52746 1687 aaPredicted RBP30.12■■■□□ 2.41
ATG4D-208ENST00000588667 SETD5Q9C0A6 1442 aa30.11■■■□□ 2.41
ATG4D-208ENST00000588667 E9PCH4 1651 aa30.08■■■□□ 2.41
ATG4D-208ENST00000588667 CEP170BQ9Y4F5 1589 aaPredicted RBP30.08■■■□□ 2.41
ATG4D-208ENST00000588667 NLRP1Q9C000 1473 aa30.06■■■□□ 2.4
ATG4D-208ENST00000588667 A2ML1A8K2U0 1454 aa30.03■■■□□ 2.4
ATG4D-208ENST00000588667 TRIM52Q96A61 297 aa30.03■■■□□ 2.4
ATG4D-208ENST00000588667 NOS1P29475 1434 aa30.03■■■□□ 2.4
ATG4D-208ENST00000588667 ACIN1Q9UKV3 1341 aaKnown RBP30.02■■■□□ 2.4
ATG4D-208ENST00000588667 RAB3GAP2Q9H2M9 1393 aa30.01■■■□□ 2.39
ATG4D-208ENST00000588667 SYNMO15061 1565 aa30.01■■■□□ 2.39
ATG4D-208ENST00000588667 HSPA2P54652 639 aa30■■■□□ 2.39
ATG4D-208ENST00000588667 UGGT1Q9NYU2 1555 aa29.94■■■□□ 2.38
ATG4D-208ENST00000588667 SPHKAPQ2M3C7 1700 aa29.93■■■□□ 2.38
ATG4D-208ENST00000588667 SLC4A1APQ9BWU0 796 aaKnown RBP29.92■■■□□ 2.38
ATG4D-208ENST00000588667 PIK3C2BO00750 1634 aa29.91■■■□□ 2.38
ATG4D-208ENST00000588667 UBR1Q8IWV7 1749 aa29.9■■■□□ 2.38
ATG4D-208ENST00000588667 HRCP23327 699 aa29.89■■■□□ 2.38
ATG4D-208ENST00000588667 KDM5AP29375 1690 aaKnown RBP29.89■■■□□ 2.37
ATG4D-208ENST00000588667 PLA2R1Q13018 1463 aa29.88■■■□□ 2.37
ATG4D-208ENST00000588667 SLC52A1Q9NWF4 448 aa29.88■■■□□ 2.37
ATG4D-208ENST00000588667 PTPRTO14522 1441 aa29.87■■■□□ 2.37
ATG4D-208ENST00000588667 PKD2Q13563 968 aa29.87■■■□□ 2.37
ATG4D-208ENST00000588667 STRCQ7RTU9 1775 aa29.87■■■□□ 2.37
ATG4D-208ENST00000588667 IDI1Q13907 227 aa29.85■■■□□ 2.37
ATG4D-208ENST00000588667 THEMISQ8N1K5 641 aaPredicted RBP29.84■■■□□ 2.37
ATG4D-208ENST00000588667 MPHOSPH9Q99550 1183 aa29.84■■■□□ 2.37
ATG4D-208ENST00000588667 ADGRB3O60242 1522 aa29.83■■■□□ 2.37
ATG4D-208ENST00000588667 TRPM2O94759 1503 aa29.83■■■□□ 2.37
ATG4D-208ENST00000588667 POLR1AO95602 1720 aaPredicted RBP29.79■■■□□ 2.36
ATG4D-208ENST00000588667 STAG3Q9UJ98 1225 aa29.78■■■□□ 2.36
ATG4D-208ENST00000588667 MYO5BQ9ULV0 1848 aa29.76■■■□□ 2.36
ATG4D-208ENST00000588667 TMEM131LA2VDJ0 1609 aa29.76■■■□□ 2.35
ATG4D-208ENST00000588667 CLTCL1P53675 1640 aa29.75■■■□□ 2.35
ATG4D-208ENST00000588667 SLIT1O75093 1534 aa29.75■■■□□ 2.35
ATG4D-208ENST00000588667 ARHGAP23Q9P227 1491 aa29.73■■■□□ 2.35
ATG4D-208ENST00000588667 FOXD1Q16676 465 aa29.73■■■□□ 2.35
ATG4D-208ENST00000588667 NCKAP5LQ9HCH0 1330 aa29.7■■■□□ 2.35
ATG4D-208ENST00000588667 NEURL4Q96JN8 1562 aa29.7■■■□□ 2.35
ATG4D-208ENST00000588667 TMEM2Q9UHN6 1383 aa29.7■■■□□ 2.34
ATG4D-208ENST00000588667 ANKLE2Q86XL3 938 aa29.7■■■□□ 2.34
ATG4D-208ENST00000588667 DMRT2Q9Y5R5 561 aa29.7■■■□□ 2.34
ATG4D-208ENST00000588667 KIF1BO60333 1816 aa29.69■■■□□ 2.34
ATG4D-208ENST00000588667 SCAF11Q99590 1463 aaKnown RBP29.66■■■□□ 2.34
ATG4D-208ENST00000588667 CHGAP10645 457 aaKnown RBP29.65■■■□□ 2.34
ATG4D-208ENST00000588667 MED14O60244 1454 aa29.65■■■□□ 2.34
ATG4D-208ENST00000588667 CCDC144AA2RUR9 1427 aa29.63■■■□□ 2.33
ATG4D-208ENST00000588667 EID1Q9Y6B2 187 aa29.62■■■□□ 2.33
ATG4D-208ENST00000588667 ZFYVE9O95405 1425 aa29.61■■■□□ 2.33
ATG4D-208ENST00000588667 IQGAP1P46940 1657 aa29.61■■■□□ 2.33
ATG4D-208ENST00000588667 NPHP4O75161 1426 aaPredicted RBP29.6■■■□□ 2.33
ATG4D-208ENST00000588667 TXNDC2Q86VQ3 553 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms