RNA–Protein interactions for RNA: ENST00000588423.1

RETREG3-206, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 559 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-206ENST00000588423 ADGRL2O95490 1459 aa24.69■■□□□ 1.54
RETREG3-206ENST00000588423 ERBINQ96RT1 1412 aa24.69■■□□□ 1.54
RETREG3-206ENST00000588423 CLTCQ00610 1675 aaKnown RBP24.69■■□□□ 1.54
RETREG3-206ENST00000588423 RNF17Q9BXT8 1623 aaKnown RBP24.68■■□□□ 1.54
RETREG3-206ENST00000588423 NCOA1Q15788 1441 aa24.67■■□□□ 1.54
RETREG3-206ENST00000588423 KDM5DQ9BY66 1539 aa24.66■■□□□ 1.54
RETREG3-206ENST00000588423 RRP7BPQ9NSQ0 103 aa24.66■■□□□ 1.54
RETREG3-206ENST00000588423 NPATQ14207 1427 aa24.66■■□□□ 1.54
RETREG3-206ENST00000588423 CHIC2Q9UKJ5 165 aa24.64■■□□□ 1.54
RETREG3-206ENST00000588423 PREX1Q8TCU6 1659 aa24.64■■□□□ 1.53
RETREG3-206ENST00000588423 WASHC2CQ9Y4E1 1318 aa24.61■■□□□ 1.53
RETREG3-206ENST00000588423 UHRF1BP1Q6BDS2 1440 aa24.61■■□□□ 1.53
RETREG3-206ENST00000588423 RRBP1Q9P2E9 1410 aaKnown RBP24.61■■□□□ 1.53
RETREG3-206ENST00000588423 MROH1Q8NDA8 1641 aa24.6■■□□□ 1.53
RETREG3-206ENST00000588423 PTPRKQ15262 1439 aa24.6■■□□□ 1.53
RETREG3-206ENST00000588423 SETD1BQ9UPS6 1966 aaKnown RBP24.6■■□□□ 1.53
RETREG3-206ENST00000588423 ZC3H13Q5T200 1668 aaKnown RBP24.59■■□□□ 1.53
RETREG3-206ENST00000588423 ROCK1Q13464 1354 aa24.57■■□□□ 1.52
RETREG3-206ENST00000588423 PRDM15P57071 1507 aaPredicted RBP24.56■■□□□ 1.52
RETREG3-206ENST00000588423 PZPP20742 1482 aa24.56■■□□□ 1.52
RETREG3-206ENST00000588423 ABCC3O15438 1527 aa24.56■■□□□ 1.52
RETREG3-206ENST00000588423 DEPDC5O75140 1603 aa24.55■■□□□ 1.52
RETREG3-206ENST00000588423 ANKRD50Q9ULJ7 1429 aa24.52■■□□□ 1.52
RETREG3-206ENST00000588423 HSPA2P54652 639 aa24.51■■□□□ 1.51
RETREG3-206ENST00000588423 KANK1Q14678 1352 aa24.48■■□□□ 1.51
RETREG3-206ENST00000588423 MYO3AQ8NEV4 1616 aa24.47■■□□□ 1.51
RETREG3-206ENST00000588423 VWDEQ8N2E2 1590 aa24.46■■□□□ 1.51
RETREG3-206ENST00000588423 CAMSAP1Q5T5Y3 1602 aa24.46■■□□□ 1.51
RETREG3-206ENST00000588423 LMTK2Q8IWU2 1503 aa24.45■■□□□ 1.51
RETREG3-206ENST00000588423 ARHGAP31Q2M1Z3 1444 aa24.45■■□□□ 1.51
RETREG3-206ENST00000588423 CEP152O94986 1710 aa24.45■■□□□ 1.5
RETREG3-206ENST00000588423 ITGAEP38570 1179 aa24.45■■□□□ 1.5
RETREG3-206ENST00000588423 FBXO31Q5XUX0 539 aaPredicted RBP24.45■■□□□ 1.5
RETREG3-206ENST00000588423 ZNF142P52746 1687 aaPredicted RBP24.45■■□□□ 1.5
RETREG3-206ENST00000588423 TNRQ92752 1358 aa24.44■■□□□ 1.5
RETREG3-206ENST00000588423 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.43■■□□□ 1.5
RETREG3-206ENST00000588423 SPATA31D1Q6ZQQ2 1576 aa24.42■■□□□ 1.5
RETREG3-206ENST00000588423 CEP170BQ9Y4F5 1589 aaPredicted RBP24.42■■□□□ 1.5
RETREG3-206ENST00000588423 A2ML1A8K2U0 1454 aa24.4■■□□□ 1.5
RETREG3-206ENST00000588423 ERVK-7P63135 1459 aa24.39■■□□□ 1.5
RETREG3-206ENST00000588423 NLRP1Q9C000 1473 aa24.38■■□□□ 1.49
RETREG3-206ENST00000588423 UNC13BO14795 1591 aa24.38■■□□□ 1.49
RETREG3-206ENST00000588423 PLA2R1Q13018 1463 aa24.35■■□□□ 1.49
RETREG3-206ENST00000588423 STRCQ7RTU9 1775 aa24.34■■□□□ 1.49
RETREG3-206ENST00000588423 EFCAB6Q5THR3 1501 aa24.34■■□□□ 1.49
RETREG3-206ENST00000588423 DMRT2Q9Y5R5 561 aa24.33■■□□□ 1.49
RETREG3-206ENST00000588423 NAIPQ13075 1403 aa24.3■■□□□ 1.48
RETREG3-206ENST00000588423 RPRD2Q5VT52 1461 aaKnown RBP24.3■■□□□ 1.48
RETREG3-206ENST00000588423 HFM1A2PYH4 1435 aa24.29■■□□□ 1.48
RETREG3-206ENST00000588423 PTPRTO14522 1441 aa24.29■■□□□ 1.48
RETREG3-206ENST00000588423 TET3O43151 1660 aa24.29■■□□□ 1.48
RETREG3-206ENST00000588423 GCC2Q8IWJ2 1684 aa24.28■■□□□ 1.48
RETREG3-206ENST00000588423 UGGT1Q9NYU2 1555 aa24.28■■□□□ 1.48
RETREG3-206ENST00000588423 IQGAP3Q86VI3 1631 aa24.28■■□□□ 1.48
RETREG3-206ENST00000588423 PKD2Q13563 968 aa24.27■■□□□ 1.48
RETREG3-206ENST00000588423 THEMISQ8N1K5 641 aaPredicted RBP24.26■■□□□ 1.47
RETREG3-206ENST00000588423 NOS1P29475 1434 aa24.26■■□□□ 1.47
RETREG3-206ENST00000588423 NUP155O75694 1391 aa24.25■■□□□ 1.47
RETREG3-206ENST00000588423 NCKAP5LQ9HCH0 1330 aa24.21■■□□□ 1.47
RETREG3-206ENST00000588423 CFAP65Q6ZU64 1925 aaKnown RBP24.2■■□□□ 1.46
RETREG3-206ENST00000588423 SYNMO15061 1565 aa24.2■■□□□ 1.46
RETREG3-206ENST00000588423 UBR1Q8IWV7 1749 aa24.18■■□□□ 1.46
RETREG3-206ENST00000588423 SLC52A1Q9NWF4 448 aa24.17■■□□□ 1.46
RETREG3-206ENST00000588423 E9PCH4 1651 aa24.17■■□□□ 1.46
RETREG3-206ENST00000588423 KDM5AP29375 1690 aaKnown RBP24.17■■□□□ 1.46
RETREG3-206ENST00000588423 ANKLE2Q86XL3 938 aa24.16■■□□□ 1.46
RETREG3-206ENST00000588423 PIK3C2BO00750 1634 aa24.15■■□□□ 1.46
RETREG3-206ENST00000588423 IDI1Q13907 227 aa24.15■■□□□ 1.46
RETREG3-206ENST00000588423 POLR1AO95602 1720 aaPredicted RBP24.15■■□□□ 1.46
RETREG3-206ENST00000588423 MED14O60244 1454 aa24.13■■□□□ 1.45
RETREG3-206ENST00000588423 NEURL4Q96JN8 1562 aa24.12■■□□□ 1.45
RETREG3-206ENST00000588423 SLIT1O75093 1534 aa24.12■■□□□ 1.45
RETREG3-206ENST00000588423 ARHGAP23Q9P227 1491 aa24.12■■□□□ 1.45
RETREG3-206ENST00000588423 ADGRB3O60242 1522 aa24.1■■□□□ 1.45
RETREG3-206ENST00000588423 STAG3Q9UJ98 1225 aa24.09■■□□□ 1.45
RETREG3-206ENST00000588423 ACIN1Q9UKV3 1341 aaKnown RBP24.08■■□□□ 1.44
RETREG3-206ENST00000588423 TMEM2Q9UHN6 1383 aa24.07■■□□□ 1.44
RETREG3-206ENST00000588423 TRIM52Q96A61 297 aa24.06■■□□□ 1.44
RETREG3-206ENST00000588423 NPHP4O75161 1426 aaPredicted RBP24.06■■□□□ 1.44
RETREG3-206ENST00000588423 SCAF11Q99590 1463 aaKnown RBP24.06■■□□□ 1.44
RETREG3-206ENST00000588423 EID1Q9Y6B2 187 aa24.03■■□□□ 1.44
RETREG3-206ENST00000588423 LTBP4Q8N2S1 1624 aa24.02■■□□□ 1.44
RETREG3-206ENST00000588423 SETD5Q9C0A6 1442 aa24.02■■□□□ 1.44
RETREG3-206ENST00000588423 TXNDC2Q86VQ3 553 aa24.02■■□□□ 1.44
RETREG3-206ENST00000588423 CERKQ8TCT0 537 aa24.02■■□□□ 1.44
RETREG3-206ENST00000588423 IQGAP1P46940 1657 aa24.02■■□□□ 1.44
RETREG3-206ENST00000588423 SPHKAPQ2M3C7 1700 aa24.01■■□□□ 1.43
RETREG3-206ENST00000588423 LTKP29376 864 aa24.01■■□□□ 1.43
RETREG3-206ENST00000588423 TMEM131LA2VDJ0 1609 aa24.01■■□□□ 1.43
RETREG3-206ENST00000588423 SLC4A1APQ9BWU0 796 aaKnown RBP23.99■■□□□ 1.43
RETREG3-206ENST00000588423 ZNF335Q9H4Z2 1342 aaPredicted RBP23.98■■□□□ 1.43
RETREG3-206ENST00000588423 TRPM2O94759 1503 aa23.98■■□□□ 1.43
RETREG3-206ENST00000588423 ZFYVE9O95405 1425 aa23.95■■□□□ 1.42
RETREG3-206ENST00000588423 FBXO41Q8TF61 875 aa23.95■■□□□ 1.42
RETREG3-206ENST00000588423 IQSEC2Q5JU85 1478 aa23.94■■□□□ 1.42
RETREG3-206ENST00000588423 HDGFP51858 240 aaKnown RBP23.94■■□□□ 1.42
RETREG3-206ENST00000588423 RAB3GAP2Q9H2M9 1393 aa23.92■■□□□ 1.42
RETREG3-206ENST00000588423 RIMS2Q9UQ26 1411 aa23.92■■□□□ 1.42
RETREG3-206ENST00000588423 MYO5BQ9ULV0 1848 aa23.91■■□□□ 1.42
RETREG3-206ENST00000588423 CHGAP10645 457 aaKnown RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms