RNA–Protein interactions for RNA: ENST00000586134.5

ZNF540-203, Transcript of zinc finger protein 540, humanhuman

TSL 5

Gene ZNF540, Length 2,038 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-203ENST00000586134 SPAG9O60271 1321 aaKnown RBP13.96□□□□□ -0.17
ZNF540-203ENST00000586134 GLIPR1L2Q4G1C9 344 aa13.96□□□□□ -0.17
ZNF540-203ENST00000586134 CNTLNQ9NXG0 1405 aa13.95□□□□□ -0.18
ZNF540-203ENST00000586134 RSPH4AQ5TD94 716 aa13.95□□□□□ -0.18
ZNF540-203ENST00000586134 ARHGEF5Q12774 1597 aa13.95□□□□□ -0.18
ZNF540-203ENST00000586134 ZNF777Q9ULD5 760 aaPredicted RBP13.94□□□□□ -0.18
ZNF540-203ENST00000586134 C3P01024 1663 aa13.93□□□□□ -0.18
ZNF540-203ENST00000586134 HNRNPMP52272 730 aaKnown RBP eCLIP13.93□□□□□ -0.18
ZNF540-203ENST00000586134 A2MP01023 1474 aa13.92□□□□□ -0.18
ZNF540-203ENST00000586134 CAMSAP2Q08AD1 1489 aa13.92□□□□□ -0.18
ZNF540-203ENST00000586134 CCDC141Q6ZP82 1450 aa13.92□□□□□ -0.18
ZNF540-203ENST00000586134 FAM135AQ9P2D6 1515 aa13.92□□□□□ -0.18
ZNF540-203ENST00000586134 MIA2Q96PC5 1412 aa13.91□□□□□ -0.18
ZNF540-203ENST00000586134 MLECQ14165 292 aa13.91□□□□□ -0.18
ZNF540-203ENST00000586134 MAST1Q9Y2H9 1570 aa13.9□□□□□ -0.18
ZNF540-203ENST00000586134 PPP6R1Q9UPN7 881 aa13.9□□□□□ -0.18
ZNF540-203ENST00000586134 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.89□□□□□ -0.19
ZNF540-203ENST00000586134 NPATQ14207 1427 aa13.87□□□□□ -0.19
ZNF540-203ENST00000586134 MYOM3Q5VTT5 1437 aa13.87□□□□□ -0.19
ZNF540-203ENST00000586134 ZNF644Q9H582 1327 aaPredicted RBP13.87□□□□□ -0.19
ZNF540-203ENST00000586134 DHX29Q7Z478 1369 aaKnown RBP13.86□□□□□ -0.19
ZNF540-203ENST00000586134 ILDR1Q86SU0 546 aaPredicted RBP13.86□□□□□ -0.19
ZNF540-203ENST00000586134 ESF1Q9H501 851 aaKnown RBP13.85□□□□□ -0.19
ZNF540-203ENST00000586134 UHRF1BP1Q6BDS2 1440 aa13.85□□□□□ -0.19
ZNF540-203ENST00000586134 CLTCQ00610 1675 aaKnown RBP13.84□□□□□ -0.19
ZNF540-203ENST00000586134 EIF2AK4Q9P2K8 1649 aaKnown RBP13.83□□□□□ -0.2
ZNF540-203ENST00000586134 KANK4Q5T7N3 995 aaPredicted RBP13.82□□□□□ -0.2
ZNF540-203ENST00000586134 ZNF142P52746 1687 aaPredicted RBP13.82□□□□□ -0.2
ZNF540-203ENST00000586134 CROCC2H7BZ55 1655 aa13.81□□□□□ -0.2
ZNF540-203ENST00000586134 SHANK2Q9UPX8 1470 aa13.81□□□□□ -0.2
ZNF540-203ENST00000586134 RNF17Q9BXT8 1623 aaKnown RBP13.8□□□□□ -0.2
ZNF540-203ENST00000586134 ZMYM3Q14202 1370 aa13.8□□□□□ -0.2
ZNF540-203ENST00000586134 TSPY4P0CV99 314 aa13.8□□□□□ -0.2
ZNF540-203ENST00000586134 TSPY10P0CW01 314 aa13.8□□□□□ -0.2
ZNF540-203ENST00000586134 STRCQ7RTU9 1775 aa13.8□□□□□ -0.2
ZNF540-203ENST00000586134 CEBPAP49715 358 aaPredicted RBP13.8□□□□□ -0.2
ZNF540-203ENST00000586134 PTPN23Q9H3S7 1636 aa13.79□□□□□ -0.2
ZNF540-203ENST00000586134 TCOF1Q13428 1488 aaKnown RBP13.79□□□□□ -0.2
ZNF540-203ENST00000586134 ZC3H13Q5T200 1668 aaKnown RBP13.79□□□□□ -0.2
ZNF540-203ENST00000586134 IL27Q8NEV9 243 aa13.78□□□□□ -0.2
ZNF540-203ENST00000586134 KDM5DQ9BY66 1539 aa13.78□□□□□ -0.2
ZNF540-203ENST00000586134 PTPRKQ15262 1439 aa13.77□□□□□ -0.2
ZNF540-203ENST00000586134 DNMT1P26358 1616 aaKnown RBP13.77□□□□□ -0.21
ZNF540-203ENST00000586134 MYO3AQ8NEV4 1616 aa13.77□□□□□ -0.21
ZNF540-203ENST00000586134 RSPH6AQ9H0K4 717 aa13.76□□□□□ -0.21
ZNF540-203ENST00000586134 C11orf95C9JLR9 678 aaPredicted RBP13.76□□□□□ -0.21
ZNF540-203ENST00000586134 HSPA2P54652 639 aa13.76□□□□□ -0.21
ZNF540-203ENST00000586134 DMRT2Q9Y5R5 561 aa13.76□□□□□ -0.21
ZNF540-203ENST00000586134 DUOX2Q9NRD8 1548 aa13.76□□□□□ -0.21
ZNF540-203ENST00000586134 PTPRTO14522 1441 aa13.75□□□□□ -0.21
ZNF540-203ENST00000586134 FGD6Q6ZV73 1430 aa13.75□□□□□ -0.21
ZNF540-203ENST00000586134 PLPPR3Q6T4P5 718 aa13.74□□□□□ -0.21
ZNF540-203ENST00000586134 FKBP8Q14318 412 aa13.74□□□□□ -0.21
ZNF540-203ENST00000586134 GGT6Q6P531 493 aa13.74□□□□□ -0.21
ZNF540-203ENST00000586134 PZPP20742 1482 aa13.74□□□□□ -0.21
ZNF540-203ENST00000586134 ZMYND15Q9H091 742 aa13.73□□□□□ -0.21
ZNF540-203ENST00000586134 PLA2R1Q13018 1463 aa13.73□□□□□ -0.21
ZNF540-203ENST00000586134 CEP170BQ9Y4F5 1589 aaPredicted RBP13.73□□□□□ -0.21
ZNF540-203ENST00000586134 NCOA1Q15788 1441 aa13.72□□□□□ -0.21
ZNF540-203ENST00000586134 KIF3BO15066 747 aa13.72□□□□□ -0.21
ZNF540-203ENST00000586134 ABCC5O15440 1437 aa13.72□□□□□ -0.21
ZNF540-203ENST00000586134 MROH1Q8NDA8 1641 aa13.71□□□□□ -0.21
ZNF540-203ENST00000586134 ERBINQ96RT1 1412 aa13.71□□□□□ -0.21
ZNF540-203ENST00000586134 PDE4CQ08493 712 aa13.71□□□□□ -0.22
ZNF540-203ENST00000586134 RTL5Q5HYW3 569 aaPredicted RBP13.71□□□□□ -0.22
ZNF540-203ENST00000586134 DAPK1P53355 1430 aa13.71□□□□□ -0.22
ZNF540-203ENST00000586134 A2ML1A8K2U0 1454 aa13.7□□□□□ -0.22
ZNF540-203ENST00000586134 DEPDC5O75140 1603 aa13.7□□□□□ -0.22
ZNF540-203ENST00000586134 BCANQ96GW7 911 aa13.69□□□□□ -0.22
ZNF540-203ENST00000586134 CAMSAP1Q5T5Y3 1602 aa13.69□□□□□ -0.22
ZNF540-203ENST00000586134 ABCC3O15438 1527 aa13.69□□□□□ -0.22
ZNF540-203ENST00000586134 PRDM15P57071 1507 aaPredicted RBP13.69□□□□□ -0.22
ZNF540-203ENST00000586134 FBXO41Q8TF61 875 aa13.69□□□□□ -0.22
ZNF540-203ENST00000586134 ADGRL2O95490 1459 aa13.68□□□□□ -0.22
ZNF540-203ENST00000586134 FGD1P98174 961 aa13.68□□□□□ -0.22
ZNF540-203ENST00000586134 NLRP1Q9C000 1473 aa13.67□□□□□ -0.22
ZNF540-203ENST00000586134 SPATA31D1Q6ZQQ2 1576 aa13.67□□□□□ -0.22
ZNF540-203ENST00000586134 PDIA4P13667 645 aaKnown RBP13.67□□□□□ -0.22
ZNF540-203ENST00000586134 NOP58Q9Y2X3 529 aaKnown RBP13.67□□□□□ -0.22
ZNF540-203ENST00000586134 WASHC2CQ9Y4E1 1318 aa13.67□□□□□ -0.22
ZNF540-203ENST00000586134 KIF15Q9NS87 1388 aa13.67□□□□□ -0.22
ZNF540-203ENST00000586134 CEP152O94986 1710 aa13.66□□□□□ -0.22
ZNF540-203ENST00000586134 RTN4Q9NQC3 1192 aaKnown RBP13.66□□□□□ -0.22
ZNF540-203ENST00000586134 TNRQ92752 1358 aa13.66□□□□□ -0.22
ZNF540-203ENST00000586134 POLR1AO95602 1720 aaPredicted RBP13.65□□□□□ -0.22
ZNF540-203ENST00000586134 PKD2Q13563 968 aa13.65□□□□□ -0.22
ZNF540-203ENST00000586134 ANKRD30AQ9BXX3 1397 aa13.65□□□□□ -0.22
ZNF540-203ENST00000586134 ARHGAP31Q2M1Z3 1444 aa13.65□□□□□ -0.22
ZNF540-203ENST00000586134 IQSEC2Q5JU85 1478 aa13.65□□□□□ -0.22
ZNF540-203ENST00000586134 VWDEQ8N2E2 1590 aa13.63□□□□□ -0.23
ZNF540-203ENST00000586134 LMTK2Q8IWU2 1503 aa13.63□□□□□ -0.23
ZNF540-203ENST00000586134 VSIG10Q8N0Z9 540 aa13.62□□□□□ -0.23
ZNF540-203ENST00000586134 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.62□□□□□ -0.23
ZNF540-203ENST00000586134 CERKQ8TCT0 537 aa13.61□□□□□ -0.23
ZNF540-203ENST00000586134 ERVK-7P63135 1459 aa13.61□□□□□ -0.23
ZNF540-203ENST00000586134 LTBP4Q8N2S1 1624 aa13.61□□□□□ -0.23
ZNF540-203ENST00000586134 KDM5AP29375 1690 aaKnown RBP13.6□□□□□ -0.23
ZNF540-203ENST00000586134 UGGT1Q9NYU2 1555 aa13.59□□□□□ -0.23
ZNF540-203ENST00000586134 AAMPQ13685 434 aa13.59□□□□□ -0.23
ZNF540-203ENST00000586134 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms