RNA–Protein interactions for RNA: ENST00000580654.5

SMARCE1-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-217ENST00000580654 POLR1AO95602 1720 aaPredicted RBP13.06□□□□□ -0.32
SMARCE1-217ENST00000580654 TOM1O60784 492 aa13.06□□□□□ -0.32
SMARCE1-217ENST00000580654 DNMT1P26358 1616 aaKnown RBP13.06□□□□□ -0.32
SMARCE1-217ENST00000580654 SAMD9LQ8IVG5 1584 aa13.05□□□□□ -0.32
SMARCE1-217ENST00000580654 RGS17Q9UGC6 210 aaPredicted RBP13.04□□□□□ -0.32
SMARCE1-217ENST00000580654 SHANK2Q9UPX8 1470 aa13.04□□□□□ -0.32
SMARCE1-217ENST00000580654 CDC42BPAQ5VT25 1732 aa13.03□□□□□ -0.32
SMARCE1-217ENST00000580654 ATP1B4Q9UN42 357 aaPredicted RBP13.03□□□□□ -0.32
SMARCE1-217ENST00000580654 PLXNC1O60486 1568 aa13.03□□□□□ -0.32
SMARCE1-217ENST00000580654 VWDEQ8N2E2 1590 aa13.03□□□□□ -0.32
SMARCE1-217ENST00000580654 CDK11AQ9UQ88 783 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-217ENST00000580654 A2ML1A8K2U0 1454 aa13.02□□□□□ -0.33
SMARCE1-217ENST00000580654 CLIP1P30622 1438 aa13.01□□□□□ -0.33
SMARCE1-217ENST00000580654 FMN1Q68DA7 1419 aa13.01□□□□□ -0.33
SMARCE1-217ENST00000580654 KCNA4P22459 653 aa13□□□□□ -0.33
SMARCE1-217ENST00000580654 STRCP1A6NGW2 1772 aa12.99□□□□□ -0.33
SMARCE1-217ENST00000580654 ARHGAP35Q9NRY4 1499 aa12.99□□□□□ -0.33
SMARCE1-217ENST00000580654 POLA2Q14181 598 aa12.99□□□□□ -0.33
SMARCE1-217ENST00000580654 INO80Q9ULG1 1556 aaPredicted RBP12.98□□□□□ -0.33
SMARCE1-217ENST00000580654 SYCP2Q9BX26 1530 aa12.98□□□□□ -0.33
SMARCE1-217ENST00000580654 EEA1Q15075 1411 aa12.97□□□□□ -0.33
SMARCE1-217ENST00000580654 ATP7AQ04656 1500 aa12.97□□□□□ -0.33
SMARCE1-217ENST00000580654 A2MP01023 1474 aa12.96□□□□□ -0.34
SMARCE1-217ENST00000580654 SPAG9O60271 1321 aaKnown RBP12.93□□□□□ -0.34
SMARCE1-217ENST00000580654 RNF17Q9BXT8 1623 aaKnown RBP12.93□□□□□ -0.34
SMARCE1-217ENST00000580654 GGT6Q6P531 493 aa12.93□□□□□ -0.34
SMARCE1-217ENST00000580654 LRRC7Q96NW7 1537 aa12.93□□□□□ -0.34
SMARCE1-217ENST00000580654 DEPDC5O75140 1603 aa12.92□□□□□ -0.34
SMARCE1-217ENST00000580654 MED14O60244 1454 aa12.91□□□□□ -0.34
SMARCE1-217ENST00000580654 SETD1AO15047 1707 aaKnown RBP12.91□□□□□ -0.34
SMARCE1-217ENST00000580654 HNRNPMP52272 730 aaKnown RBP eCLIP12.91□□□□□ -0.34
SMARCE1-217ENST00000580654 POTEAQ6S8J7 498 aa12.91□□□□□ -0.34
SMARCE1-217ENST00000580654 AKT1S1Q96B36 256 aa12.91□□□□□ -0.34
SMARCE1-217ENST00000580654 ADGBQ8N7X0 1667 aa12.91□□□□□ -0.34
SMARCE1-217ENST00000580654 IQGAP1P46940 1657 aa12.9□□□□□ -0.34
SMARCE1-217ENST00000580654 NPHP4O75161 1426 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-217ENST00000580654 FBXO31Q5XUX0 539 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-217ENST00000580654 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.9□□□□□ -0.34
SMARCE1-217ENST00000580654 SYNMO15061 1565 aa12.9□□□□□ -0.35
SMARCE1-217ENST00000580654 GPATCH8Q9UKJ3 1502 aaKnown RBP12.89□□□□□ -0.35
SMARCE1-217ENST00000580654 ZNF777Q9ULD5 760 aaPredicted RBP12.89□□□□□ -0.35
SMARCE1-217ENST00000580654 TNRQ92752 1358 aa12.89□□□□□ -0.35
SMARCE1-217ENST00000580654 XIRP1Q702N8 1843 aaKnown RBP12.88□□□□□ -0.35
SMARCE1-217ENST00000580654 PZPP20742 1482 aa12.87□□□□□ -0.35
SMARCE1-217ENST00000580654 ANKLE2Q86XL3 938 aa12.87□□□□□ -0.35
SMARCE1-217ENST00000580654 KIAA1107Q9UPP5 1409 aa12.87□□□□□ -0.35
SMARCE1-217ENST00000580654 CCDC18Q5T9S5 1454 aa12.86□□□□□ -0.35
SMARCE1-217ENST00000580654 ZC3H13Q5T200 1668 aaKnown RBP12.86□□□□□ -0.35
SMARCE1-217ENST00000580654 UGGT1Q9NYU2 1555 aa12.86□□□□□ -0.35
SMARCE1-217ENST00000580654 EHMT2Q96KQ7 1210 aa12.84□□□□□ -0.35
SMARCE1-217ENST00000580654 CASKIN1Q8WXD9 1431 aa12.84□□□□□ -0.35
SMARCE1-217ENST00000580654 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-217ENST00000580654 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
SMARCE1-217ENST00000580654 NLRP1Q9C000 1473 aa12.83□□□□□ -0.36
SMARCE1-217ENST00000580654 KDM5DQ9BY66 1539 aa12.83□□□□□ -0.36
SMARCE1-217ENST00000580654 MIA2Q96PC5 1412 aa12.82□□□□□ -0.36
SMARCE1-217ENST00000580654 THEMISQ8N1K5 641 aaPredicted RBP12.82□□□□□ -0.36
SMARCE1-217ENST00000580654 PLEKHH2Q8IVE3 1493 aa12.82□□□□□ -0.36
SMARCE1-217ENST00000580654 SRCAPQ6ZRS2 3230 aa12.81□□□□□ -0.36
SMARCE1-217ENST00000580654 UBTFP17480 764 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-217ENST00000580654 FAM135AQ9P2D6 1515 aa12.81□□□□□ -0.36
SMARCE1-217ENST00000580654 DHX29Q7Z478 1369 aaKnown RBP12.8□□□□□ -0.36
SMARCE1-217ENST00000580654 MBD5Q9P267 1494 aa12.79□□□□□ -0.36
SMARCE1-217ENST00000580654 CFDP1Q9UEE9 299 aaPredicted RBP12.78□□□□□ -0.36
SMARCE1-217ENST00000580654 FAM135BQ49AJ0 1406 aa12.78□□□□□ -0.36
SMARCE1-217ENST00000580654 ZNF644Q9H582 1327 aaPredicted RBP12.77□□□□□ -0.37
SMARCE1-217ENST00000580654 RTEL1-TNFRSF6BF6WH68 1400 aa12.77□□□□□ -0.37
SMARCE1-217ENST00000580654 ROBO1Q9Y6N7 1651 aa12.77□□□□□ -0.37
SMARCE1-217ENST00000580654 KIF3BO15066 747 aa12.76□□□□□ -0.37
SMARCE1-217ENST00000580654 REM2Q8IYK8 340 aaPredicted RBP12.76□□□□□ -0.37
SMARCE1-217ENST00000580654 UBR1Q8IWV7 1749 aa12.76□□□□□ -0.37
SMARCE1-217ENST00000580654 HAX1O00165 279 aa12.75□□□□□ -0.37
SMARCE1-217ENST00000580654 FYCO1Q9BQS8 1478 aa12.75□□□□□ -0.37
SMARCE1-217ENST00000580654 CCNB3Q8WWL7 1395 aa12.74□□□□□ -0.37
SMARCE1-217ENST00000580654 WASHC2CQ9Y4E1 1318 aa12.74□□□□□ -0.37
SMARCE1-217ENST00000580654 UPF1Q92900 1129 aaKnown RBP eCLIP12.74□□□□□ -0.37
SMARCE1-217ENST00000580654 ZBTB12Q9Y330 459 aaPredicted RBP12.74□□□□□ -0.37
SMARCE1-217ENST00000580654 TIAM1Q13009 1591 aa12.73□□□□□ -0.37
SMARCE1-217ENST00000580654 NCOA2Q15596 1464 aa12.72□□□□□ -0.37
SMARCE1-217ENST00000580654 SCAF11Q99590 1463 aaKnown RBP12.72□□□□□ -0.37
SMARCE1-217ENST00000580654 ARHGAP23Q9P227 1491 aa12.71□□□□□ -0.38
SMARCE1-217ENST00000580654 LTKP29376 864 aa12.7□□□□□ -0.38
SMARCE1-217ENST00000580654 MAP3K1Q13233 1512 aa12.7□□□□□ -0.38
SMARCE1-217ENST00000580654 ERVK-7P63135 1459 aa12.7□□□□□ -0.38
SMARCE1-217ENST00000580654 ABCC3O15438 1527 aa12.69□□□□□ -0.38
SMARCE1-217ENST00000580654 SLIT1O75093 1534 aa12.69□□□□□ -0.38
SMARCE1-217ENST00000580654 PHLPP1O60346 1717 aa12.69□□□□□ -0.38
SMARCE1-217ENST00000580654 CFAP65Q6ZU64 1925 aaKnown RBP12.69□□□□□ -0.38
SMARCE1-217ENST00000580654 TMEM94Q12767 1356 aa12.68□□□□□ -0.38
SMARCE1-217ENST00000580654 LRP6O75581 1613 aa12.67□□□□□ -0.38
SMARCE1-217ENST00000580654 MROH1Q8NDA8 1641 aa12.66□□□□□ -0.38
SMARCE1-217ENST00000580654 CCDC141Q6ZP82 1450 aa12.66□□□□□ -0.38
SMARCE1-217ENST00000580654 CEP152O94986 1710 aa12.66□□□□□ -0.38
SMARCE1-217ENST00000580654 FXR2P51116 673 aaKnown RBP eCLIP12.66□□□□□ -0.38
SMARCE1-217ENST00000580654 COL16A1Q07092 1604 aaPredicted RBP12.65□□□□□ -0.38
SMARCE1-217ENST00000580654 PITPNM1O00562 1244 aa12.64□□□□□ -0.39
SMARCE1-217ENST00000580654 TXNDC2Q86VQ3 553 aa12.64□□□□□ -0.39
SMARCE1-217ENST00000580654 RBM33Q96EV2 1170 aaKnown RBP12.64□□□□□ -0.39
SMARCE1-217ENST00000580654 JCADQ9P266 1359 aa12.64□□□□□ -0.39
SMARCE1-217ENST00000580654 LRRC9Q6ZRR7 1453 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms