RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 DHX29Q7Z478 1369 aaKnown RBP15.73■□□□□ 0.11
SS18-207ENST00000577636 TNRQ92752 1358 aa15.73■□□□□ 0.11
SS18-207ENST00000577636 A2ML1A8K2U0 1454 aa15.72■□□□□ 0.11
SS18-207ENST00000577636 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.71■□□□□ 0.11
SS18-207ENST00000577636 ZNF142P52746 1687 aaPredicted RBP15.7■□□□□ 0.1
SS18-207ENST00000577636 THEMISQ8N1K5 641 aaPredicted RBP15.7■□□□□ 0.1
SS18-207ENST00000577636 PHF23Q9BUL5 403 aaPredicted RBP15.69■□□□□ 0.1
SS18-207ENST00000577636 MBD5Q9P267 1494 aa15.69■□□□□ 0.1
SS18-207ENST00000577636 DNMT1P26358 1616 aaKnown RBP15.68■□□□□ 0.1
SS18-207ENST00000577636 RTEL1-TNFRSF6BF6WH68 1400 aa15.68■□□□□ 0.1
SS18-207ENST00000577636 SHANK2Q9UPX8 1470 aa15.67■□□□□ 0.1
SS18-207ENST00000577636 ADGBQ8N7X0 1667 aa15.67■□□□□ 0.1
SS18-207ENST00000577636 TSPY4P0CV99 314 aa15.66■□□□□ 0.1
SS18-207ENST00000577636 TSPY10P0CW01 314 aa15.66■□□□□ 0.1
SS18-207ENST00000577636 TIAM1Q13009 1591 aa15.65■□□□□ 0.1
SS18-207ENST00000577636 RSPH4AQ5TD94 716 aa15.64■□□□□ 0.09
SS18-207ENST00000577636 MIA2Q96PC5 1412 aa15.64■□□□□ 0.09
SS18-207ENST00000577636 CPS1P31327 1500 aa15.63■□□□□ 0.09
SS18-207ENST00000577636 NPHP4O75161 1426 aaPredicted RBP15.62■□□□□ 0.09
SS18-207ENST00000577636 PZPP20742 1482 aa15.62■□□□□ 0.09
SS18-207ENST00000577636 MED1Q15648 1581 aaPredicted RBP15.62■□□□□ 0.09
SS18-207ENST00000577636 CCDC141Q6ZP82 1450 aa15.61■□□□□ 0.09
SS18-207ENST00000577636 APLP2Q06481 763 aa15.61■□□□□ 0.09
SS18-207ENST00000577636 EHBP1L1Q8N3D4 1523 aa15.61■□□□□ 0.09
SS18-207ENST00000577636 KDM5DQ9BY66 1539 aa15.6■□□□□ 0.09
SS18-207ENST00000577636 FAM135AQ9P2D6 1515 aa15.6■□□□□ 0.09
SS18-207ENST00000577636 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
SS18-207ENST00000577636 NEURL4Q96JN8 1562 aa15.6■□□□□ 0.09
SS18-207ENST00000577636 VPS8Q8N3P4 1428 aa15.6■□□□□ 0.09
SS18-207ENST00000577636 UGGT1Q9NYU2 1555 aa15.59■□□□□ 0.09
SS18-207ENST00000577636 CAMSAP2Q08AD1 1489 aa15.59■□□□□ 0.09
SS18-207ENST00000577636 POLR1AO95602 1720 aaPredicted RBP15.57■□□□□ 0.08
SS18-207ENST00000577636 NCOA2Q15596 1464 aa15.57■□□□□ 0.08
SS18-207ENST00000577636 NLRP1Q9C000 1473 aa15.57■□□□□ 0.08
SS18-207ENST00000577636 VWDEQ8N2E2 1590 aa15.55■□□□□ 0.08
SS18-207ENST00000577636 PCGF6Q9BYE7 350 aa15.55■□□□□ 0.08
SS18-207ENST00000577636 MED14O60244 1454 aa15.53■□□□□ 0.08
SS18-207ENST00000577636 TXNDC2Q86VQ3 553 aa15.53■□□□□ 0.08
SS18-207ENST00000577636 LRRC7Q96NW7 1537 aa15.51■□□□□ 0.07
SS18-207ENST00000577636 LTKP29376 864 aa15.5■□□□□ 0.07
SS18-207ENST00000577636 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.5■□□□□ 0.074e-7■□□□□ 9.3
SS18-207ENST00000577636 STAG3Q9UJ98 1225 aa15.5■□□□□ 0.07
SS18-207ENST00000577636 DEPDC5O75140 1603 aa15.49■□□□□ 0.07
SS18-207ENST00000577636 ALKQ9UM73 1620 aa15.49■□□□□ 0.07
SS18-207ENST00000577636 IQGAP1P46940 1657 aa15.48■□□□□ 0.07
SS18-207ENST00000577636 EID1Q9Y6B2 187 aa15.48■□□□□ 0.07
SS18-207ENST00000577636 ABCC3O15438 1527 aa15.48■□□□□ 0.07
SS18-207ENST00000577636 ERVK-7P63135 1459 aa15.47■□□□□ 0.07
SS18-207ENST00000577636 CFAP65Q6ZU64 1925 aaKnown RBP15.47■□□□□ 0.07
SS18-207ENST00000577636 ARHGEF5Q12774 1597 aa15.46■□□□□ 0.07
SS18-207ENST00000577636 KANK4Q5T7N3 995 aaPredicted RBP15.46■□□□□ 0.07
SS18-207ENST00000577636 PPARGC1BQ86YN6 1023 aaKnown RBP15.46■□□□□ 0.07
SS18-207ENST00000577636 RRP7BPQ9NSQ0 103 aa15.46■□□□□ 0.07
SS18-207ENST00000577636 STRCP1A6NGW2 1772 aa15.45■□□□□ 0.06
SS18-207ENST00000577636 RGS17Q9UGC6 210 aaPredicted RBP15.45■□□□□ 0.06
SS18-207ENST00000577636 RBM33Q96EV2 1170 aaKnown RBP15.44■□□□□ 0.06
SS18-207ENST00000577636 SCAF11Q99590 1463 aaKnown RBP15.44■□□□□ 0.06
SS18-207ENST00000577636 LRRC9Q6ZRR7 1453 aa15.42■□□□□ 0.06
SS18-207ENST00000577636 BCANQ96GW7 911 aa15.42■□□□□ 0.06
SS18-207ENST00000577636 RNF17Q9BXT8 1623 aaKnown RBP15.4■□□□□ 0.06
SS18-207ENST00000577636 PROSER2Q86WR7 435 aaPredicted RBP15.4■□□□□ 0.06
SS18-207ENST00000577636 SLC26A8Q96RN1 970 aa15.4■□□□□ 0.06
SS18-207ENST00000577636 POTEAQ6S8J7 498 aa15.39■□□□□ 0.05
SS18-207ENST00000577636 CHIC2Q9UKJ5 165 aa15.39■□□□□ 0.05
SS18-207ENST00000577636 CEP152O94986 1710 aa15.39■□□□□ 0.05
SS18-207ENST00000577636 ZC3H13Q5T200 1668 aaKnown RBP15.38■□□□□ 0.05
SS18-207ENST00000577636 KIF15Q9NS87 1388 aa15.38■□□□□ 0.05
SS18-207ENST00000577636 SYNMO15061 1565 aa15.38■□□□□ 0.05
SS18-207ENST00000577636 MYOM3Q5VTT5 1437 aa15.38■□□□□ 0.05
SS18-207ENST00000577636 IDI1Q13907 227 aa15.38■□□□□ 0.05
SS18-207ENST00000577636 UBR1Q8IWV7 1749 aa15.37■□□□□ 0.05
SS18-207ENST00000577636 MAST1Q9Y2H9 1570 aa15.37■□□□□ 0.05
SS18-207ENST00000577636 KCNA6P17658 529 aa15.37■□□□□ 0.05
SS18-207ENST00000577636 DUOX2Q9NRD8 1548 aa15.37■□□□□ 0.05
SS18-207ENST00000577636 TMEM94Q12767 1356 aa15.36■□□□□ 0.05
SS18-207ENST00000577636 TMEM2Q9UHN6 1383 aa15.36■□□□□ 0.05
SS18-207ENST00000577636 MROH1Q8NDA8 1641 aa15.36■□□□□ 0.05
SS18-207ENST00000577636 KANK1Q14678 1352 aa15.36■□□□□ 0.05
SS18-207ENST00000577636 EIF2AK4Q9P2K8 1649 aaKnown RBP15.35■□□□□ 0.05
SS18-207ENST00000577636 ARHGAP23Q9P227 1491 aa15.35■□□□□ 0.05
SS18-207ENST00000577636 FAM135BQ49AJ0 1406 aa15.34■□□□□ 0.05
SS18-207ENST00000577636 SLIT1O75093 1534 aa15.34■□□□□ 0.05
SS18-207ENST00000577636 ARHGAP31Q2M1Z3 1444 aa15.34■□□□□ 0.05
SS18-207ENST00000577636 MAP3K1Q13233 1512 aa15.33■□□□□ 0.04
SS18-207ENST00000577636 ABCC5O15440 1437 aa15.32■□□□□ 0.04
SS18-207ENST00000577636 PIK3C2BO00750 1634 aa15.3■□□□□ 0.04
SS18-207ENST00000577636 ERBINQ96RT1 1412 aa15.3■□□□□ 0.04
SS18-207ENST00000577636 SLAIN2Q9P270 581 aa15.29■□□□□ 0.04
SS18-207ENST00000577636 XIRP1Q702N8 1843 aaKnown RBP15.29■□□□□ 0.04
SS18-207ENST00000577636 PPP1R15AO75807 674 aaPredicted RBP15.28■□□□□ 0.04
SS18-207ENST00000577636 EFCAB6Q5THR3 1501 aa15.27■□□□□ 0.04
SS18-207ENST00000577636 MSH6P52701 1360 aa15.27■□□□□ 0.04
SS18-207ENST00000577636 CHGAP10645 457 aaKnown RBP15.27■□□□□ 0.04
SS18-207ENST00000577636 C14orf37Q86TY3 774 aa15.27■□□□□ 0.04
SS18-207ENST00000577636 PRDM15P57071 1507 aaPredicted RBP15.27■□□□□ 0.03
SS18-207ENST00000577636 DAPK1P53355 1430 aa15.26■□□□□ 0.03
SS18-207ENST00000577636 ANKRD30AQ9BXX3 1397 aa15.26■□□□□ 0.03
SS18-207ENST00000577636 MEX3CQ5U5Q3 659 aaKnown RBP15.25■□□□□ 0.03
SS18-207ENST00000577636 SLC52A1Q9NWF4 448 aa15.25■□□□□ 0.03
SS18-207ENST00000577636 ROBO1Q9Y6N7 1651 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms