RNA–Protein interactions for RNA: ENST00000571457.1

CHMP6-202, Transcript of charged multivesicular body protein 6, humanhuman

TSL 3

Gene CHMP6, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP6-202ENST00000571457 POLR1AO95602 1720 aaPredicted RBP18.42■□□□□ 0.54
CHMP6-202ENST00000571457 RTEL1-TNFRSF6BF6WH68 1400 aa18.41■□□□□ 0.54
CHMP6-202ENST00000571457 ANKLE2Q86XL3 938 aa18.41■□□□□ 0.54
CHMP6-202ENST00000571457 DHX29Q7Z478 1369 aaKnown RBP18.41■□□□□ 0.54
CHMP6-202ENST00000571457 THEMISQ8N1K5 641 aaPredicted RBP18.39■□□□□ 0.53
CHMP6-202ENST00000571457 PHF23Q9BUL5 403 aaPredicted RBP18.39■□□□□ 0.53
CHMP6-202ENST00000571457 FAM135AQ9P2D6 1515 aa18.39■□□□□ 0.53
CHMP6-202ENST00000571457 NEURL4Q96JN8 1562 aa18.38■□□□□ 0.53
CHMP6-202ENST00000571457 KIF3BO15066 747 aa18.37■□□□□ 0.53
CHMP6-202ENST00000571457 FBXO31Q5XUX0 539 aaPredicted RBP18.37■□□□□ 0.53
CHMP6-202ENST00000571457 ZNF644Q9H582 1327 aaPredicted RBP18.37■□□□□ 0.53
CHMP6-202ENST00000571457 PZPP20742 1482 aa18.37■□□□□ 0.53
CHMP6-202ENST00000571457 MBD5Q9P267 1494 aa18.37■□□□□ 0.53
CHMP6-202ENST00000571457 WASHC2CQ9Y4E1 1318 aa18.36■□□□□ 0.53
CHMP6-202ENST00000571457 KDM5DQ9BY66 1539 aa18.35■□□□□ 0.53
CHMP6-202ENST00000571457 NLRP1Q9C000 1473 aa18.34■□□□□ 0.53
CHMP6-202ENST00000571457 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.34■□□□□ 0.53
CHMP6-202ENST00000571457 RSPH4AQ5TD94 716 aa18.33■□□□□ 0.52
CHMP6-202ENST00000571457 TIAM1Q13009 1591 aa18.33■□□□□ 0.52
CHMP6-202ENST00000571457 VWDEQ8N2E2 1590 aa18.33■□□□□ 0.52
CHMP6-202ENST00000571457 MED14O60244 1454 aa18.33■□□□□ 0.52
CHMP6-202ENST00000571457 NPHP4O75161 1426 aaPredicted RBP18.32■□□□□ 0.52
CHMP6-202ENST00000571457 MIA2Q96PC5 1412 aa18.32■□□□□ 0.52
CHMP6-202ENST00000571457 UGGT1Q9NYU2 1555 aa18.31■□□□□ 0.52
CHMP6-202ENST00000571457 DEPDC5O75140 1603 aa18.31■□□□□ 0.52
CHMP6-202ENST00000571457 EHBP1L1Q8N3D4 1523 aa18.3■□□□□ 0.52
CHMP6-202ENST00000571457 CCDC141Q6ZP82 1450 aa18.29■□□□□ 0.52
CHMP6-202ENST00000571457 CEP162Q5TB80 1403 aa18.29■□□□□ 0.52
CHMP6-202ENST00000571457 ALKQ9UM73 1620 aa18.26■□□□□ 0.51
CHMP6-202ENST00000571457 IQGAP1P46940 1657 aa18.25■□□□□ 0.51
CHMP6-202ENST00000571457 CAMSAP2Q08AD1 1489 aa18.23■□□□□ 0.51
CHMP6-202ENST00000571457 TSPY4P0CV99 314 aa18.23■□□□□ 0.51
CHMP6-202ENST00000571457 TSPY10P0CW01 314 aa18.23■□□□□ 0.51
CHMP6-202ENST00000571457 LRRC7Q96NW7 1537 aa18.23■□□□□ 0.51
CHMP6-202ENST00000571457 SYNMO15061 1565 aa18.22■□□□□ 0.51
CHMP6-202ENST00000571457 RNF17Q9BXT8 1623 aaKnown RBP18.22■□□□□ 0.51
CHMP6-202ENST00000571457 SENP3Q9H4L4 574 aaPredicted RBP18.2■□□□□ 0.5
CHMP6-202ENST00000571457 ARHGEF5Q12774 1597 aa18.18■□□□□ 0.5
CHMP6-202ENST00000571457 NCOA2Q15596 1464 aa18.18■□□□□ 0.5
CHMP6-202ENST00000571457 ZC3H13Q5T200 1668 aaKnown RBP18.17■□□□□ 0.5
CHMP6-202ENST00000571457 ABCC3O15438 1527 aa18.17■□□□□ 0.5
CHMP6-202ENST00000571457 STRCP1A6NGW2 1772 aa18.17■□□□□ 0.5
CHMP6-202ENST00000571457 ERVK-7P63135 1459 aa18.15■□□□□ 0.5
CHMP6-202ENST00000571457 SCAF11Q99590 1463 aaKnown RBP18.14■□□□□ 0.49
CHMP6-202ENST00000571457 RGS17Q9UGC6 210 aaPredicted RBP18.11■□□□□ 0.49
CHMP6-202ENST00000571457 EIF2AK4Q9P2K8 1649 aaKnown RBP18.11■□□□□ 0.49
CHMP6-202ENST00000571457 UBR1Q8IWV7 1749 aa18.1■□□□□ 0.49
CHMP6-202ENST00000571457 TXNDC2Q86VQ3 553 aa18.1■□□□□ 0.49
CHMP6-202ENST00000571457 EID1Q9Y6B2 187 aa18.1■□□□□ 0.49
CHMP6-202ENST00000571457 MAST1Q9Y2H9 1570 aa18.08■□□□□ 0.49
CHMP6-202ENST00000571457 FAM135BQ49AJ0 1406 aa18.08■□□□□ 0.49
CHMP6-202ENST00000571457 LTKP29376 864 aa18.08■□□□□ 0.48
CHMP6-202ENST00000571457 SLIT1O75093 1534 aa18.08■□□□□ 0.48
CHMP6-202ENST00000571457 ARHGAP23Q9P227 1491 aa18.07■□□□□ 0.48
CHMP6-202ENST00000571457 CFAP65Q6ZU64 1925 aaKnown RBP18.07■□□□□ 0.48
CHMP6-202ENST00000571457 MROH1Q8NDA8 1641 aa18.05■□□□□ 0.48
CHMP6-202ENST00000571457 ARHGAP31Q2M1Z3 1444 aa18.04■□□□□ 0.48
CHMP6-202ENST00000571457 CEP152O94986 1710 aa18.03■□□□□ 0.48
CHMP6-202ENST00000571457 DUOX2Q9NRD8 1548 aa18.03■□□□□ 0.48
CHMP6-202ENST00000571457 XIRP1Q702N8 1843 aaKnown RBP18.02■□□□□ 0.48
CHMP6-202ENST00000571457 STAG3Q9UJ98 1225 aa18.02■□□□□ 0.48
CHMP6-202ENST00000571457 POTEAQ6S8J7 498 aa18.01■□□□□ 0.47
CHMP6-202ENST00000571457 TMEM2Q9UHN6 1383 aa18.01■□□□□ 0.47
CHMP6-202ENST00000571457 TMEM94Q12767 1356 aa18■□□□□ 0.47
CHMP6-202ENST00000571457 LRRC9Q6ZRR7 1453 aa18■□□□□ 0.47
CHMP6-202ENST00000571457 MYOM3Q5VTT5 1437 aa17.99■□□□□ 0.47
CHMP6-202ENST00000571457 KCNA6P17658 529 aa17.99■□□□□ 0.47
CHMP6-202ENST00000571457 PRDM15P57071 1507 aaPredicted RBP17.98■□□□□ 0.47
CHMP6-202ENST00000571457 PROSER2Q86WR7 435 aaPredicted RBP17.97■□□□□ 0.47
CHMP6-202ENST00000571457 KANK1Q14678 1352 aa17.96■□□□□ 0.47
CHMP6-202ENST00000571457 KIF15Q9NS87 1388 aa17.96■□□□□ 0.47
CHMP6-202ENST00000571457 ERBINQ96RT1 1412 aa17.96■□□□□ 0.47
CHMP6-202ENST00000571457 PIK3C2BO00750 1634 aa17.95■□□□□ 0.46
CHMP6-202ENST00000571457 KDM5AP29375 1690 aaKnown RBP17.95■□□□□ 0.46
CHMP6-202ENST00000571457 ROBO1Q9Y6N7 1651 aa17.95■□□□□ 0.46
CHMP6-202ENST00000571457 EFCAB6Q5THR3 1501 aa17.94■□□□□ 0.46
CHMP6-202ENST00000571457 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.94■□□□□ 0.46
CHMP6-202ENST00000571457 SLC26A8Q96RN1 970 aa17.92■□□□□ 0.46
CHMP6-202ENST00000571457 NKTRP30414 1462 aaKnown RBP17.92■□□□□ 0.46
CHMP6-202ENST00000571457 MAP3K1Q13233 1512 aa17.92■□□□□ 0.46
CHMP6-202ENST00000571457 MSH6P52701 1360 aa17.91■□□□□ 0.46
CHMP6-202ENST00000571457 VPS8Q8N3P4 1428 aa17.91■□□□□ 0.46
CHMP6-202ENST00000571457 IDI1Q13907 227 aa17.91■□□□□ 0.46
CHMP6-202ENST00000571457 RRP7BPQ9NSQ0 103 aa17.91■□□□□ 0.46
CHMP6-202ENST00000571457 SLAIN2Q9P270 581 aa17.9■□□□□ 0.46
CHMP6-202ENST00000571457 JCADQ9P266 1359 aa17.9■□□□□ 0.46
CHMP6-202ENST00000571457 TET3O43151 1660 aa17.9■□□□□ 0.46
CHMP6-202ENST00000571457 RBM33Q96EV2 1170 aaKnown RBP17.88■□□□□ 0.45
CHMP6-202ENST00000571457 BCANQ96GW7 911 aa17.88■□□□□ 0.45
CHMP6-202ENST00000571457 KANK4Q5T7N3 995 aaPredicted RBP17.87■□□□□ 0.45
CHMP6-202ENST00000571457 LMTK2Q8IWU2 1503 aa17.87■□□□□ 0.45
CHMP6-202ENST00000571457 NWD1Q149M9 1564 aa17.87■□□□□ 0.45
CHMP6-202ENST00000571457 SLC52A1Q9NWF4 448 aa17.86■□□□□ 0.45
CHMP6-202ENST00000571457 ABCC5O15440 1437 aa17.86■□□□□ 0.45
CHMP6-202ENST00000571457 CROCC2H7BZ55 1655 aa17.85■□□□□ 0.45
CHMP6-202ENST00000571457 PHLPP1O60346 1717 aa17.85■□□□□ 0.45
CHMP6-202ENST00000571457 ADGRB3O60242 1522 aa17.83■□□□□ 0.45
CHMP6-202ENST00000571457 HDGFP51858 240 aaKnown RBP17.83■□□□□ 0.44
CHMP6-202ENST00000571457 SETD1AO15047 1707 aaKnown RBP17.83■□□□□ 0.44
CHMP6-202ENST00000571457 NOS1P29475 1434 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms