RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GPATCH8Q9UKJ3 1502 aaKnown RBP18.06■□□□□ 0.48
VPS53-207ENST00000570510 PLXNC1O60486 1568 aa18.05■□□□□ 0.48
VPS53-207ENST00000570510 WASHC2CQ9Y4E1 1318 aa18.04■□□□□ 0.48
VPS53-207ENST00000570510 KIF3BO15066 747 aa18.04■□□□□ 0.48
VPS53-207ENST00000570510 POLR1AO95602 1720 aaPredicted RBP18.03■□□□□ 0.48
VPS53-207ENST00000570510 NPHP4O75161 1426 aaPredicted RBP18.02■□□□□ 0.48
VPS53-207ENST00000570510 INO80Q9ULG1 1556 aaPredicted RBP18.02■□□□□ 0.48
VPS53-207ENST00000570510 NEURL4Q96JN8 1562 aa18■□□□□ 0.47
VPS53-207ENST00000570510 FAM135AQ9P2D6 1515 aa18■□□□□ 0.47
VPS53-207ENST00000570510 ADGBQ8N7X0 1667 aa17.99■□□□□ 0.47
VPS53-207ENST00000570510 DHX29Q7Z478 1369 aaKnown RBP17.99■□□□□ 0.47
VPS53-207ENST00000570510 MTUS2Q5JR59 1369 aa17.98■□□□□ 0.47
VPS53-207ENST00000570510 FYCO1Q9BQS8 1478 aa17.98■□□□□ 0.47
VPS53-207ENST00000570510 MIA2Q96PC5 1412 aa17.97■□□□□ 0.47
VPS53-207ENST00000570510 VWDEQ8N2E2 1590 aa17.96■□□□□ 0.47
VPS53-207ENST00000570510 UGGT1Q9NYU2 1555 aa17.96■□□□□ 0.47
VPS53-207ENST00000570510 PZPP20742 1482 aa17.96■□□□□ 0.47
VPS53-207ENST00000570510 ZNF644Q9H582 1327 aaPredicted RBP17.96■□□□□ 0.46
VPS53-207ENST00000570510 NLRP1Q9C000 1473 aa17.95■□□□□ 0.46
VPS53-207ENST00000570510 RGS17Q9UGC6 210 aaPredicted RBP17.94■□□□□ 0.46
VPS53-207ENST00000570510 MED14O60244 1454 aa17.94■□□□□ 0.46
VPS53-207ENST00000570510 KDM5DQ9BY66 1539 aa17.93■□□□□ 0.46
VPS53-207ENST00000570510 RTEL1-TNFRSF6BF6WH68 1400 aa17.93■□□□□ 0.46
VPS53-207ENST00000570510 LRRC7Q96NW7 1537 aa17.93■□□□□ 0.46
VPS53-207ENST00000570510 DEPDC5O75140 1603 aa17.9■□□□□ 0.46
VPS53-207ENST00000570510 ALKQ9UM73 1620 aa17.9■□□□□ 0.46
VPS53-207ENST00000570510 RNF17Q9BXT8 1623 aaKnown RBP17.9■□□□□ 0.46
VPS53-207ENST00000570510 IQGAP1P46940 1657 aa17.9■□□□□ 0.46
VPS53-207ENST00000570510 RSPH4AQ5TD94 716 aa17.87■□□□□ 0.45
VPS53-207ENST00000570510 POTEAQ6S8J7 498 aa17.87■□□□□ 0.45
VPS53-207ENST00000570510 TSPY4P0CV99 314 aa17.86■□□□□ 0.45
VPS53-207ENST00000570510 TSPY10P0CW01 314 aa17.86■□□□□ 0.45
VPS53-207ENST00000570510 MBD5Q9P267 1494 aa17.86■□□□□ 0.45
VPS53-207ENST00000570510 SYNMO15061 1565 aa17.86■□□□□ 0.45
VPS53-207ENST00000570510 EID1Q9Y6B2 187 aa17.84■□□□□ 0.45
VPS53-207ENST00000570510 TXNDC2Q86VQ3 553 aa17.83■□□□□ 0.44
VPS53-207ENST00000570510 CCDC141Q6ZP82 1450 aa17.82■□□□□ 0.44
VPS53-207ENST00000570510 STRCP1A6NGW2 1772 aa17.8■□□□□ 0.44
VPS53-207ENST00000570510 TIAM1Q13009 1591 aa17.79■□□□□ 0.44
VPS53-207ENST00000570510 SCAF11Q99590 1463 aaKnown RBP17.79■□□□□ 0.44
VPS53-207ENST00000570510 FAM135BQ49AJ0 1406 aa17.79■□□□□ 0.44
VPS53-207ENST00000570510 STAG3Q9UJ98 1225 aa17.78■□□□□ 0.44
VPS53-207ENST00000570510 LTKP29376 864 aa17.75■□□□□ 0.43
VPS53-207ENST00000570510 EHBP1L1Q8N3D4 1523 aa17.75■□□□□ 0.43
VPS53-207ENST00000570510 CEP162Q5TB80 1403 aa17.74■□□□□ 0.43
VPS53-207ENST00000570510 PROSER2Q86WR7 435 aaPredicted RBP17.74■□□□□ 0.43
VPS53-207ENST00000570510 ERVK-7P63135 1459 aa17.74■□□□□ 0.43
VPS53-207ENST00000570510 CAMSAP2Q08AD1 1489 aa17.74■□□□□ 0.43
VPS53-207ENST00000570510 TMEM94Q12767 1356 aa17.72■□□□□ 0.43
VPS53-207ENST00000570510 ABCC3O15438 1527 aa17.72■□□□□ 0.43
VPS53-207ENST00000570510 MEX3CQ5U5Q3 659 aaKnown RBP17.71■□□□□ 0.43
VPS53-207ENST00000570510 BCANQ96GW7 911 aa17.71■□□□□ 0.43
VPS53-207ENST00000570510 ZC3H13Q5T200 1668 aaKnown RBP17.7■□□□□ 0.42
VPS53-207ENST00000570510 KCNA6P17658 529 aa17.69■□□□□ 0.42
VPS53-207ENST00000570510 RBM33Q96EV2 1170 aaKnown RBP17.69■□□□□ 0.42
VPS53-207ENST00000570510 TRIM52Q96A61 297 aa17.67■□□□□ 0.42
VPS53-207ENST00000570510 UBR1Q8IWV7 1749 aa17.67■□□□□ 0.42
VPS53-207ENST00000570510 JCADQ9P266 1359 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 ZNF772Q68DY9 489 aaPredicted RBP17.66■□□□□ 0.42
VPS53-207ENST00000570510 UPF1Q92900 1129 aaKnown RBP eCLIP17.66■□□□□ 0.42
VPS53-207ENST00000570510 SLC26A8Q96RN1 970 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 SLAIN2Q9P270 581 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 NCOA2Q15596 1464 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 LRRC9Q6ZRR7 1453 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 ROBO1Q9Y6N7 1651 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 MSH6P52701 1360 aa17.66■□□□□ 0.42
VPS53-207ENST00000570510 SLIT1O75093 1534 aa17.65■□□□□ 0.42
VPS53-207ENST00000570510 CFAP65Q6ZU64 1925 aaKnown RBP17.64■□□□□ 0.42
VPS53-207ENST00000570510 SETD1AO15047 1707 aaKnown RBP17.64■□□□□ 0.41
VPS53-207ENST00000570510 ARHGAP23Q9P227 1491 aa17.64■□□□□ 0.41
VPS53-207ENST00000570510 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.64■□□□□ 0.41
VPS53-207ENST00000570510 TMEM2Q9UHN6 1383 aa17.64■□□□□ 0.41
VPS53-207ENST00000570510 ARHGEF5Q12774 1597 aa17.63■□□□□ 0.41
VPS53-207ENST00000570510 XIRP1Q702N8 1843 aaKnown RBP17.63■□□□□ 0.41
VPS53-207ENST00000570510 C14orf37Q86TY3 774 aa17.61■□□□□ 0.41
VPS53-207ENST00000570510 RXRBP28702 533 aa17.59■□□□□ 0.41
VPS53-207ENST00000570510 EIF2AK4Q9P2K8 1649 aaKnown RBP17.58■□□□□ 0.41
VPS53-207ENST00000570510 KANK1Q14678 1352 aa17.58■□□□□ 0.4
VPS53-207ENST00000570510 SPATA31A6Q5VVP1 1343 aa17.58■□□□□ 0.4
VPS53-207ENST00000570510 PHLPP1O60346 1717 aa17.58■□□□□ 0.4
VPS53-207ENST00000570510 CEP152O94986 1710 aa17.58■□□□□ 0.4
VPS53-207ENST00000570510 PRDM15P57071 1507 aaPredicted RBP17.57■□□□□ 0.4
VPS53-207ENST00000570510 ARHGAP31Q2M1Z3 1444 aa17.56■□□□□ 0.4
VPS53-207ENST00000570510 IDI1Q13907 227 aa17.56■□□□□ 0.4
VPS53-207ENST00000570510 MAP3K1Q13233 1512 aa17.55■□□□□ 0.4
VPS53-207ENST00000570510 EFCAB6Q5THR3 1501 aa17.54■□□□□ 0.4
VPS53-207ENST00000570510 DUOX2Q9NRD8 1548 aa17.54■□□□□ 0.4
VPS53-207ENST00000570510 PPP1R15AO75807 674 aaPredicted RBP17.54■□□□□ 0.4
VPS53-207ENST00000570510 RRP7BPQ9NSQ0 103 aa17.54■□□□□ 0.4
VPS53-207ENST00000570510 NKTRP30414 1462 aaKnown RBP17.54■□□□□ 0.4
VPS53-207ENST00000570510 PIK3C2BO00750 1634 aa17.54■□□□□ 0.4
VPS53-207ENST00000570510 MAST1Q9Y2H9 1570 aa17.53■□□□□ 0.4
VPS53-207ENST00000570510 NUTM2BA6NNL0 878 aaPredicted RBP17.53■□□□□ 0.4
VPS53-207ENST00000570510 NUTM2EB1AL46 878 aaPredicted RBP17.53■□□□□ 0.4
VPS53-207ENST00000570510 NUTM2AQ8IVF1 878 aaPredicted RBP17.53■□□□□ 0.4
VPS53-207ENST00000570510 MROH1Q8NDA8 1641 aa17.52■□□□□ 0.4
VPS53-207ENST00000570510 HDGFP51858 240 aaKnown RBP17.52■□□□□ 0.4
VPS53-207ENST00000570510 KIF15Q9NS87 1388 aa17.52■□□□□ 0.39
VPS53-207ENST00000570510 ATF3P18847 181 aa17.51■□□□□ 0.39
VPS53-207ENST00000570510 FGD6Q6ZV73 1430 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms