RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PRDM15P57071 1507 aaPredicted RBP14.14□□□□□ -0.15
VPS35-211ENST00000569950 ANKRD50Q9ULJ7 1429 aa14.14□□□□□ -0.15
VPS35-211ENST00000569950 MADDQ8WXG6 1647 aa14.12□□□□□ -0.15
VPS35-211ENST00000569950 FER1L4A9Z1Z3 1794 aa14.11□□□□□ -0.15
VPS35-211ENST00000569950 MYT1LQ9UL68 1186 aa14.1□□□□□ -0.15
VPS35-211ENST00000569950 KDM5DQ9BY66 1539 aa14.1□□□□□ -0.15
VPS35-211ENST00000569950 CEP152O94986 1710 aa14.1□□□□□ -0.15
VPS35-211ENST00000569950 TRIM26Q12899 539 aaPredicted RBP14.09□□□□□ -0.15
VPS35-211ENST00000569950 CLTCQ00610 1675 aaKnown RBP14.07□□□□□ -0.16
VPS35-211ENST00000569950 ABCC3O15438 1527 aa14.07□□□□□ -0.16
VPS35-211ENST00000569950 IQGAP3Q86VI3 1631 aa14.07□□□□□ -0.16
VPS35-211ENST00000569950 SETD5Q9C0A6 1442 aa14.07□□□□□ -0.16
VPS35-211ENST00000569950 FAM135AQ9P2D6 1515 aa14.06□□□□□ -0.16
VPS35-211ENST00000569950 KDM4FA0A1W2PPD8 638 aa14.06□□□□□ -0.16
VPS35-211ENST00000569950 KIF3BO15066 747 aa14.06□□□□□ -0.16
VPS35-211ENST00000569950 MROH2AA6NES4 1674 aa14.06□□□□□ -0.16
VPS35-211ENST00000569950 ZC3H13Q5T200 1668 aaKnown RBP14.06□□□□□ -0.16
VPS35-211ENST00000569950 RIMS1Q86UR5 1692 aaKnown RBP14.06□□□□□ -0.16
VPS35-211ENST00000569950 LMTK2Q8IWU2 1503 aa14.05□□□□□ -0.16
VPS35-211ENST00000569950 CAMSAP1Q5T5Y3 1602 aa14.04□□□□□ -0.16
VPS35-211ENST00000569950 C3P01024 1663 aa14.04□□□□□ -0.16
VPS35-211ENST00000569950 RAB3GAP2Q9H2M9 1393 aa14.04□□□□□ -0.16
VPS35-211ENST00000569950 PZPP20742 1482 aa14.04□□□□□ -0.16
VPS35-211ENST00000569950 TET3O43151 1660 aa14.02□□□□□ -0.16
VPS35-211ENST00000569950 ARID4BQ4LE39 1312 aaPredicted RBP14.02□□□□□ -0.17
VPS35-211ENST00000569950 MLECQ14165 292 aa14.02□□□□□ -0.17
VPS35-211ENST00000569950 E9PCH4 1651 aa14.01□□□□□ -0.17
VPS35-211ENST00000569950 GGT6Q6P531 493 aa14.01□□□□□ -0.17
VPS35-211ENST00000569950 EFCAB6Q5THR3 1501 aa14□□□□□ -0.17
VPS35-211ENST00000569950 PTPRMP28827 1452 aa13.99□□□□□ -0.17
VPS35-211ENST00000569950 PPP6R1Q9UPN7 881 aa13.98□□□□□ -0.17
VPS35-211ENST00000569950 CNTLNQ9NXG0 1405 aa13.98□□□□□ -0.17
VPS35-211ENST00000569950 CFAP65Q6ZU64 1925 aaKnown RBP13.98□□□□□ -0.17
VPS35-211ENST00000569950 NPATQ14207 1427 aa13.97□□□□□ -0.17
VPS35-211ENST00000569950 ARHGAP31Q2M1Z3 1444 aa13.97□□□□□ -0.17
VPS35-211ENST00000569950 NUP155O75694 1391 aa13.96□□□□□ -0.17
VPS35-211ENST00000569950 PREX1Q8TCU6 1659 aa13.96□□□□□ -0.17
VPS35-211ENST00000569950 HRCP23327 699 aa13.96□□□□□ -0.17
VPS35-211ENST00000569950 SPATA31D1Q6ZQQ2 1576 aa13.95□□□□□ -0.18
VPS35-211ENST00000569950 ZMYM3Q14202 1370 aa13.95□□□□□ -0.18
VPS35-211ENST00000569950 SYNMO15061 1565 aa13.94□□□□□ -0.18
VPS35-211ENST00000569950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.18
VPS35-211ENST00000569950 PCGF6Q9BYE7 350 aa13.93□□□□□ -0.18
VPS35-211ENST00000569950 PLA2R1Q13018 1463 aa13.93□□□□□ -0.18
VPS35-211ENST00000569950 WASHC2CQ9Y4E1 1318 aa13.92□□□□□ -0.18
VPS35-211ENST00000569950 NOS1P29475 1434 aa13.92□□□□□ -0.18
VPS35-211ENST00000569950 CEBPAP49715 358 aaPredicted RBP13.92□□□□□ -0.18
VPS35-211ENST00000569950 ERVK-7P63135 1459 aa13.92□□□□□ -0.18
VPS35-211ENST00000569950 SPHKAPQ2M3C7 1700 aa13.91□□□□□ -0.18
VPS35-211ENST00000569950 KANK1Q14678 1352 aa13.91□□□□□ -0.18
VPS35-211ENST00000569950 RPRD2Q5VT52 1461 aaKnown RBP13.91□□□□□ -0.18
VPS35-211ENST00000569950 PIK3C2BO00750 1634 aa13.9□□□□□ -0.18
VPS35-211ENST00000569950 FBXO31Q5XUX0 539 aaPredicted RBP13.9□□□□□ -0.18
VPS35-211ENST00000569950 SETD1BQ9UPS6 1966 aaKnown RBP13.9□□□□□ -0.18
VPS35-211ENST00000569950 PTPRTO14522 1441 aa13.9□□□□□ -0.19
VPS35-211ENST00000569950 MYO3AQ8NEV4 1616 aa13.89□□□□□ -0.19
VPS35-211ENST00000569950 UGGT1Q9NYU2 1555 aa13.88□□□□□ -0.19
VPS35-211ENST00000569950 MPHOSPH9Q99550 1183 aa13.87□□□□□ -0.19
VPS35-211ENST00000569950 ZNF142P52746 1687 aaPredicted RBP13.87□□□□□ -0.19
VPS35-211ENST00000569950 TRPM2O94759 1503 aa13.86□□□□□ -0.19
VPS35-211ENST00000569950 TRIM52Q96A61 297 aa13.86□□□□□ -0.19
VPS35-211ENST00000569950 CLTCL1P53675 1640 aa13.86□□□□□ -0.19
VPS35-211ENST00000569950 DHX57Q6P158 1386 aaKnown RBP13.85□□□□□ -0.19
VPS35-211ENST00000569950 PKD2Q13563 968 aa13.85□□□□□ -0.19
VPS35-211ENST00000569950 MYO5BQ9ULV0 1848 aa13.85□□□□□ -0.19
VPS35-211ENST00000569950 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
VPS35-211ENST00000569950 UBR1Q8IWV7 1749 aa13.83□□□□□ -0.2
VPS35-211ENST00000569950 ACIN1Q9UKV3 1341 aaKnown RBP13.83□□□□□ -0.2
VPS35-211ENST00000569950 TNRQ92752 1358 aa13.83□□□□□ -0.2
VPS35-211ENST00000569950 LMTK3Q96Q04 1460 aa13.82□□□□□ -0.2
VPS35-211ENST00000569950 ESF1Q9H501 851 aaKnown RBP13.82□□□□□ -0.2
VPS35-211ENST00000569950 CEP170BQ9Y4F5 1589 aaPredicted RBP13.82□□□□□ -0.2
VPS35-211ENST00000569950 ANKRD30BQ9BXX2 1392 aa13.82□□□□□ -0.2
VPS35-211ENST00000569950 KDM5AP29375 1690 aaKnown RBP13.82□□□□□ -0.2
VPS35-211ENST00000569950 TMEM131LA2VDJ0 1609 aa13.81□□□□□ -0.2
VPS35-211ENST00000569950 NLRP1Q9C000 1473 aa13.8□□□□□ -0.2
VPS35-211ENST00000569950 A2ML1A8K2U0 1454 aa13.79□□□□□ -0.2
VPS35-211ENST00000569950 PLPPR3Q6T4P5 718 aa13.78□□□□□ -0.2
VPS35-211ENST00000569950 ADGRB3O60242 1522 aa13.78□□□□□ -0.2
VPS35-211ENST00000569950 IDI1Q13907 227 aa13.77□□□□□ -0.21
VPS35-211ENST00000569950 KIF1BO60333 1816 aa13.76□□□□□ -0.21
VPS35-211ENST00000569950 SPATA31E1Q6ZUB1 1445 aa13.75□□□□□ -0.21
VPS35-211ENST00000569950 IFT172Q9UG01 1749 aa13.75□□□□□ -0.21
VPS35-211ENST00000569950 NEURL4Q96JN8 1562 aa13.75□□□□□ -0.21
VPS35-211ENST00000569950 UHRF1BP1Q6BDS2 1440 aa13.74□□□□□ -0.21
VPS35-211ENST00000569950 ARHGAP23Q9P227 1491 aa13.74□□□□□ -0.21
VPS35-211ENST00000569950 STRCQ7RTU9 1775 aa13.73□□□□□ -0.21
VPS35-211ENST00000569950 SLC52A1Q9NWF4 448 aa13.72□□□□□ -0.21
VPS35-211ENST00000569950 SLIT1O75093 1534 aa13.72□□□□□ -0.21
VPS35-211ENST00000569950 PPLO60437 1756 aa13.71□□□□□ -0.21
VPS35-211ENST00000569950 ZFYVE9O95405 1425 aa13.71□□□□□ -0.22
VPS35-211ENST00000569950 NEXMIFQ5QGS0 1516 aa13.7□□□□□ -0.22
VPS35-211ENST00000569950 CCDC144AA2RUR9 1427 aa13.7□□□□□ -0.22
VPS35-211ENST00000569950 POLR1AO95602 1720 aaPredicted RBP13.69□□□□□ -0.22
VPS35-211ENST00000569950 HSPA2P54652 639 aa13.67□□□□□ -0.22
VPS35-211ENST00000569950 SIN3AQ96ST3 1273 aa13.67□□□□□ -0.22
VPS35-211ENST00000569950 TMEM2Q9UHN6 1383 aa13.67□□□□□ -0.22
VPS35-211ENST00000569950 NRXN3Q9Y4C0 1643 aa13.66□□□□□ -0.22
VPS35-211ENST00000569950 LTKP29376 864 aa13.64□□□□□ -0.23
VPS35-211ENST00000569950 SETD1AO15047 1707 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms