RNA–Protein interactions for RNA: ENST00000569440.5

BBS4-218, Transcript of Bardet-Biedl syndrome 4, human

TSL 4

Gene BBS4, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-218	ENST00000569440	RNF17	Q9BXT8	1623 aa	Known RBP	10.61	□□□□□ -0.71
BBS4-218	ENST00000569440	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.6	□□□□□ -0.71
BBS4-218	ENST00000569440	SETD1A	O15047	1707 aa	Known RBP	10.6	□□□□□ -0.71
BBS4-218	ENST00000569440	CLIP1	P30622	1438 aa		10.59	□□□□□ -0.71
BBS4-218	ENST00000569440	TRIM52	Q96A61	297 aa		10.59	□□□□□ -0.71
BBS4-218	ENST00000569440	A2M	P01023	1474 aa		10.59	□□□□□ -0.71
BBS4-218	ENST00000569440	SAMD9L	Q8IVG5	1584 aa		10.59	□□□□□ -0.71
BBS4-218	ENST00000569440	CLTC	Q00610	1675 aa	Known RBP	10.59	□□□□□ -0.71
BBS4-218	ENST00000569440	PLXNC1	O60486	1568 aa		10.58	□□□□□ -0.72
BBS4-218	ENST00000569440	ZNF772	Q68DY9	489 aa	Predicted RBP	10.58	□□□□□ -0.72
BBS4-218	ENST00000569440	MIA2	Q96PC5	1412 aa		10.58	□□□□□ -0.72
BBS4-218	ENST00000569440	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.57	□□□□□ -0.72
BBS4-218	ENST00000569440	DEPDC5	O75140	1603 aa		10.57	□□□□□ -0.72
BBS4-218	ENST00000569440	FAM135A	Q9P2D6	1515 aa		10.56	□□□□□ -0.72
BBS4-218	ENST00000569440	SYNM	O15061	1565 aa		10.56	□□□□□ -0.72
BBS4-218	ENST00000569440	NLRP1	Q9C000	1473 aa		10.55	□□□□□ -0.72
BBS4-218	ENST00000569440	JCAD	Q9P266	1359 aa		10.55	□□□□□ -0.72
BBS4-218	ENST00000569440	RXRB	P28702	533 aa		10.55	□□□□□ -0.72
BBS4-218	ENST00000569440	POLR1A	O95602	1720 aa	Predicted RBP	10.55	□□□□□ -0.72
BBS4-218	ENST00000569440	SUPT6H	Q7KZ85	1726 aa	Known RBP	10.55	□□□□□ -0.72
BBS4-218	ENST00000569440	PZP	P20742	1482 aa		10.55	□□□□□ -0.72
BBS4-218	ENST00000569440	FMN1	Q68DA7	1419 aa		10.54	□□□□□ -0.72
BBS4-218	ENST00000569440	UGGT1	Q9NYU2	1555 aa		10.54	□□□□□ -0.72
BBS4-218	ENST00000569440	STRCP1	A6NGW2	1772 aa		10.54	□□□□□ -0.72
BBS4-218	ENST00000569440	ITSN2	Q9NZM3	1697 aa		10.53	□□□□□ -0.72
BBS4-218	ENST00000569440	EHMT2	Q96KQ7	1210 aa		10.53	□□□□□ -0.72
BBS4-218	ENST00000569440	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.53	□□□□□ -0.72
BBS4-218	ENST00000569440	KDM5D	Q9BY66	1539 aa		10.53	□□□□□ -0.72
BBS4-218	ENST00000569440	CDC42BPB	Q9Y5S2	1711 aa		10.53	□□□□□ -0.72
BBS4-218	ENST00000569440	KIAA1107	Q9UPP5	1409 aa		10.52	□□□□□ -0.73
BBS4-218	ENST00000569440	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.52	□□□□□ -0.73
BBS4-218	ENST00000569440	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.52	□□□□□ -0.73
BBS4-218	ENST00000569440	ATP7A	Q04656	1500 aa		10.52	□□□□□ -0.73
BBS4-218	ENST00000569440	SPATA31A6	Q5VVP1	1343 aa		10.51	□□□□□ -0.73
BBS4-218	ENST00000569440	TMEM94	Q12767	1356 aa		10.51	□□□□□ -0.73
BBS4-218	ENST00000569440	PREX2	Q70Z35	1606 aa		10.51	□□□□□ -0.73
BBS4-218	ENST00000569440	DHX29	Q7Z478	1369 aa	Known RBP	10.51	□□□□□ -0.73
BBS4-218	ENST00000569440	IQGAP1	P46940	1657 aa		10.5	□□□□□ -0.73
BBS4-218	ENST00000569440	WASHC2C	Q9Y4E1	1318 aa		10.5	□□□□□ -0.73
BBS4-218	ENST00000569440	LRP6	O75581	1613 aa		10.49	□□□□□ -0.73
BBS4-218	ENST00000569440	LTK	P29376	864 aa		10.49	□□□□□ -0.73
BBS4-218	ENST00000569440	ZRANB1	Q9UGI0	708 aa		10.49	□□□□□ -0.73
BBS4-218	ENST00000569440	SYCP2	Q9BX26	1530 aa		10.48	□□□□□ -0.73
BBS4-218	ENST00000569440	KIF3B	O15066	747 aa		10.48	□□□□□ -0.73
BBS4-218	ENST00000569440	SLAIN2	Q9P270	581 aa		10.48	□□□□□ -0.73
BBS4-218	ENST00000569440	SLC4A2	P04920	1241 aa		10.47	□□□□□ -0.73
BBS4-218	ENST00000569440	MEX3C	Q5U5Q3	659 aa	Known RBP	10.47	□□□□□ -0.73
BBS4-218	ENST00000569440	GPATCH8	Q9UKJ3	1502 aa	Known RBP	10.47	□□□□□ -0.73
BBS4-218	ENST00000569440	INO80	Q9ULG1	1556 aa	Predicted RBP	10.47	□□□□□ -0.73
BBS4-218	ENST00000569440	KCNA6	P17658	529 aa		10.46	□□□□□ -0.73
BBS4-218	ENST00000569440	TXNDC2	Q86VQ3	553 aa		10.46	□□□□□ -0.73
BBS4-218	ENST00000569440	ROBO1	Q9Y6N7	1651 aa		10.45	□□□□□ -0.74
BBS4-218	ENST00000569440	LRRC9	Q6ZRR7	1453 aa		10.45	□□□□□ -0.74
BBS4-218	ENST00000569440	PLEKHH2	Q8IVE3	1493 aa		10.45	□□□□□ -0.74
BBS4-218	ENST00000569440	SCAF11	Q99590	1463 aa	Known RBP	10.45	□□□□□ -0.74
BBS4-218	ENST00000569440	FGD6	Q6ZV73	1430 aa		10.45	□□□□□ -0.74
BBS4-218	ENST00000569440	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.44	□□□□□ -0.74
BBS4-218	ENST00000569440	PROSER2	Q86WR7	435 aa	Predicted RBP	10.44	□□□□□ -0.74
BBS4-218	ENST00000569440	RBM33	Q96EV2	1170 aa	Known RBP	10.44	□□□□□ -0.74
BBS4-218	ENST00000569440	CFDP1	Q9UEE9	299 aa	Predicted RBP	10.44	□□□□□ -0.74
BBS4-218	ENST00000569440	ZC3H13	Q5T200	1668 aa	Known RBP	10.44	□□□□□ -0.74
BBS4-218	ENST00000569440	ARHGAP35	Q9NRY4	1499 aa		10.43	□□□□□ -0.74
BBS4-218	ENST00000569440	SETBP1	Q9Y6X0	1596 aa		10.43	□□□□□ -0.74
BBS4-218	ENST00000569440	MAP3K1	Q13233	1512 aa		10.43	□□□□□ -0.74
BBS4-218	ENST00000569440	ARHGAP23	Q9P227	1491 aa		10.42	□□□□□ -0.74
BBS4-218	ENST00000569440	NCOA2	Q15596	1464 aa		10.42	□□□□□ -0.74
BBS4-218	ENST00000569440	RGS12	O14924	1447 aa		10.41	□□□□□ -0.74
BBS4-218	ENST00000569440	RBM6	P78332	1123 aa	Known RBP	10.41	□□□□□ -0.74
BBS4-218	ENST00000569440	MBD5	Q9P267	1494 aa		10.41	□□□□□ -0.74
BBS4-218	ENST00000569440	EEA1	Q15075	1411 aa		10.41	□□□□□ -0.74
BBS4-218	ENST00000569440	XIRP1	Q702N8	1843 aa	Known RBP	10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	AFF2	P51816	1311 aa		10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	SLIT1	O75093	1534 aa		10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	NUTM2E	B1AL46	878 aa	Predicted RBP	10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	QTRT2	Q9H974	415 aa	Known RBP	10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	EID1	Q9Y6B2	187 aa		10.4	□□□□□ -0.74
BBS4-218	ENST00000569440	MSH6	P52701	1360 aa		10.39	□□□□□ -0.75
BBS4-218	ENST00000569440	ZNF644	Q9H582	1327 aa	Predicted RBP	10.39	□□□□□ -0.75
BBS4-218	ENST00000569440	RNF39	Q9H2S5	420 aa		10.39	□□□□□ -0.75
BBS4-218	ENST00000569440	ATAD2	Q6PL18	1390 aa		10.39	□□□□□ -0.75
BBS4-218	ENST00000569440	PRDM15	P57071	1507 aa	Predicted RBP	10.38	□□□□□ -0.75
BBS4-218	ENST00000569440	COL16A1	Q07092	1604 aa	Predicted RBP	10.38	□□□□□ -0.75
BBS4-218	ENST00000569440	ERVK-7	P63135	1459 aa		10.37	□□□□□ -0.75
BBS4-218	ENST00000569440	CCDC18	Q5T9S5	1454 aa		10.37	□□□□□ -0.75
BBS4-218	ENST00000569440	CDC42BPA	Q5VT25	1732 aa		10.37	□□□□□ -0.75
BBS4-218	ENST00000569440	CASKIN1	Q8WXD9	1431 aa		10.37	□□□□□ -0.75
BBS4-218	ENST00000569440	ADGB	Q8N7X0	1667 aa		10.37	□□□□□ -0.75
BBS4-218	ENST00000569440	CCDC125	Q86Z20	511 aa		10.36	□□□□□ -0.75
BBS4-218	ENST00000569440	SLC26A8	Q96RN1	970 aa		10.36	□□□□□ -0.75
BBS4-218	ENST00000569440	CCNB3	Q8WWL7	1395 aa		10.36	□□□□□ -0.75
BBS4-218	ENST00000569440	TMEM2	Q9UHN6	1383 aa		10.36	□□□□□ -0.75
BBS4-218	ENST00000569440	PHLPP1	O60346	1717 aa		10.36	□□□□□ -0.75
BBS4-218	ENST00000569440	ABCC3	O15438	1527 aa		10.34	□□□□□ -0.75
BBS4-218	ENST00000569440	UBTF	P17480	764 aa	Known RBP	10.34	□□□□□ -0.75
BBS4-218	ENST00000569440	NGLY1	Q96IV0	654 aa		10.34	□□□□□ -0.75
BBS4-218	ENST00000569440	NKTR	P30414	1462 aa	Known RBP	10.34	□□□□□ -0.75
BBS4-218	ENST00000569440		U3KPZ7	1027 aa	Predicted RBP	10.33	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms