RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 RNF17Q9BXT8 1623 aaKnown RBP25.12■■□□□ 1.61
COMMD4-224ENST00000568877 ESF1Q9H501 851 aaKnown RBP25.1■■□□□ 1.61
COMMD4-224ENST00000568877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.09■■□□□ 1.61
COMMD4-224ENST00000568877 SETD5Q9C0A6 1442 aa25.08■■□□□ 1.61
COMMD4-224ENST00000568877 MROH1Q8NDA8 1641 aa25.08■■□□□ 1.6
COMMD4-224ENST00000568877 MADDQ8WXG6 1647 aa25.08■■□□□ 1.6
COMMD4-224ENST00000568877 DEPDC5O75140 1603 aa25.07■■□□□ 1.6
COMMD4-224ENST00000568877 WASHC2CQ9Y4E1 1318 aa25.07■■□□□ 1.6
COMMD4-224ENST00000568877 PRDM15P57071 1507 aaPredicted RBP25.06■■□□□ 1.6
COMMD4-224ENST00000568877 KANK1Q14678 1352 aa25.05■■□□□ 1.6
COMMD4-224ENST00000568877 CNTLNQ9NXG0 1405 aa25.04■■□□□ 1.6
COMMD4-224ENST00000568877 FER1L4A9Z1Z3 1794 aa25.04■■□□□ 1.6
COMMD4-224ENST00000568877 FAM135AQ9P2D6 1515 aa25.03■■□□□ 1.6
COMMD4-224ENST00000568877 KDM5DQ9BY66 1539 aa25.02■■□□□ 1.6
COMMD4-224ENST00000568877 UNC13BO14795 1591 aa25.02■■□□□ 1.6
COMMD4-224ENST00000568877 RIMS1Q86UR5 1692 aaKnown RBP25.01■■□□□ 1.59
COMMD4-224ENST00000568877 RAB3GAP2Q9H2M9 1393 aa25■■□□□ 1.59
COMMD4-224ENST00000568877 ABCC3O15438 1527 aa25■■□□□ 1.59
COMMD4-224ENST00000568877 NUP155O75694 1391 aa24.99■■□□□ 1.59
COMMD4-224ENST00000568877 CLTCQ00610 1675 aaKnown RBP24.99■■□□□ 1.59
COMMD4-224ENST00000568877 VWDEQ8N2E2 1590 aa24.99■■□□□ 1.59
COMMD4-224ENST00000568877 PTPRMP28827 1452 aa24.98■■□□□ 1.59
COMMD4-224ENST00000568877 ZMYM3Q14202 1370 aa24.98■■□□□ 1.59
COMMD4-224ENST00000568877 TRIM52Q96A61 297 aa24.97■■□□□ 1.59
COMMD4-224ENST00000568877 ZC3H13Q5T200 1668 aaKnown RBP24.97■■□□□ 1.59
COMMD4-224ENST00000568877 ACIN1Q9UKV3 1341 aaKnown RBP24.96■■□□□ 1.59
COMMD4-224ENST00000568877 LMTK2Q8IWU2 1503 aa24.95■■□□□ 1.58
COMMD4-224ENST00000568877 MROH2AA6NES4 1674 aa24.94■■□□□ 1.58
COMMD4-224ENST00000568877 HRCP23327 699 aa24.94■■□□□ 1.58
COMMD4-224ENST00000568877 CEP152O94986 1710 aa24.93■■□□□ 1.58
COMMD4-224ENST00000568877 CEBPAP49715 358 aaPredicted RBP24.93■■□□□ 1.58
COMMD4-224ENST00000568877 PLPPR3Q6T4P5 718 aa24.92■■□□□ 1.58
COMMD4-224ENST00000568877 IQGAP3Q86VI3 1631 aa24.92■■□□□ 1.58
COMMD4-224ENST00000568877 PCGF6Q9BYE7 350 aa24.91■■□□□ 1.58
COMMD4-224ENST00000568877 C3P01024 1663 aa24.89■■□□□ 1.58
COMMD4-224ENST00000568877 CAMSAP1Q5T5Y3 1602 aa24.89■■□□□ 1.57
COMMD4-224ENST00000568877 ARHGAP31Q2M1Z3 1444 aa24.88■■□□□ 1.57
COMMD4-224ENST00000568877 PZPP20742 1482 aa24.87■■□□□ 1.57
COMMD4-224ENST00000568877 EFCAB6Q5THR3 1501 aa24.86■■□□□ 1.57
COMMD4-224ENST00000568877 TET3O43151 1660 aa24.85■■□□□ 1.57
COMMD4-224ENST00000568877 NPATQ14207 1427 aa24.85■■□□□ 1.57
COMMD4-224ENST00000568877 FBXO31Q5XUX0 539 aaPredicted RBP24.84■■□□□ 1.57
COMMD4-224ENST00000568877 SLC4A1APQ9BWU0 796 aaKnown RBP24.84■■□□□ 1.57
COMMD4-224ENST00000568877 MPHOSPH9Q99550 1183 aa24.82■■□□□ 1.56
COMMD4-224ENST00000568877 RPRD2Q5VT52 1461 aaKnown RBP24.81■■□□□ 1.56
COMMD4-224ENST00000568877 PKD2Q13563 968 aa24.78■■□□□ 1.56
COMMD4-224ENST00000568877 AEBP2Q6ZN18 517 aaPredicted RBP24.78■■□□□ 1.56
COMMD4-224ENST00000568877 ERVK-7P63135 1459 aa24.77■■□□□ 1.56
COMMD4-224ENST00000568877 E9PCH4 1651 aa24.77■■□□□ 1.56
COMMD4-224ENST00000568877 TNRQ92752 1358 aa24.76■■□□□ 1.55
COMMD4-224ENST00000568877 SPATA31D1Q6ZQQ2 1576 aa24.76■■□□□ 1.55
COMMD4-224ENST00000568877 PREX1Q8TCU6 1659 aa24.74■■□□□ 1.55
COMMD4-224ENST00000568877 NOS1P29475 1434 aa24.73■■□□□ 1.55
COMMD4-224ENST00000568877 FOXD1Q16676 465 aa24.7■■□□□ 1.54
COMMD4-224ENST00000568877 CFAP65Q6ZU64 1925 aaKnown RBP24.7■■□□□ 1.54
COMMD4-224ENST00000568877 PTPRTO14522 1441 aa24.69■■□□□ 1.54
COMMD4-224ENST00000568877 UHRF1BP1Q6BDS2 1440 aa24.67■■□□□ 1.54
COMMD4-224ENST00000568877 SETD1BQ9UPS6 1966 aaKnown RBP24.67■■□□□ 1.54
COMMD4-224ENST00000568877 SLC52A1Q9NWF4 448 aa24.66■■□□□ 1.54
COMMD4-224ENST00000568877 SYNMO15061 1565 aa24.66■■□□□ 1.54
COMMD4-224ENST00000568877 NLRP1Q9C000 1473 aa24.65■■□□□ 1.54
COMMD4-224ENST00000568877 MYO3AQ8NEV4 1616 aa24.64■■□□□ 1.54
COMMD4-224ENST00000568877 PLA2R1Q13018 1463 aa24.64■■□□□ 1.53
COMMD4-224ENST00000568877 IDI1Q13907 227 aa24.63■■□□□ 1.53
COMMD4-224ENST00000568877 SPHKAPQ2M3C7 1700 aa24.63■■□□□ 1.53
COMMD4-224ENST00000568877 A2ML1A8K2U0 1454 aa24.61■■□□□ 1.53
COMMD4-224ENST00000568877 TRPM2O94759 1503 aa24.61■■□□□ 1.53
COMMD4-224ENST00000568877 LMTK3Q96Q04 1460 aa24.59■■□□□ 1.53
COMMD4-224ENST00000568877 DHX57Q6P158 1386 aaKnown RBP24.59■■□□□ 1.53
COMMD4-224ENST00000568877 UGGT1Q9NYU2 1555 aa24.59■■□□□ 1.53
COMMD4-224ENST00000568877 CEP170BQ9Y4F5 1589 aaPredicted RBP24.59■■□□□ 1.53
COMMD4-224ENST00000568877 PIK3C2BO00750 1634 aa24.57■■□□□ 1.52
COMMD4-224ENST00000568877 ANKRD30BQ9BXX2 1392 aa24.56■■□□□ 1.52
COMMD4-224ENST00000568877 ZNF142P52746 1687 aaPredicted RBP24.56■■□□□ 1.52
COMMD4-224ENST00000568877 STAG3Q9UJ98 1225 aa24.55■■□□□ 1.52
COMMD4-224ENST00000568877 CCDC144AA2RUR9 1427 aa24.53■■□□□ 1.52
COMMD4-224ENST00000568877 THEMISQ8N1K5 641 aaPredicted RBP24.53■■□□□ 1.52
COMMD4-224ENST00000568877 CLTCL1P53675 1640 aa24.53■■□□□ 1.52
COMMD4-224ENST00000568877 CHGAP10645 457 aaKnown RBP24.51■■□□□ 1.51
COMMD4-224ENST00000568877 HSPA2P54652 639 aa24.51■■□□□ 1.51
COMMD4-224ENST00000568877 ADGRB3O60242 1522 aa24.5■■□□□ 1.51
COMMD4-224ENST00000568877 UBR1Q8IWV7 1749 aa24.49■■□□□ 1.51
COMMD4-224ENST00000568877 KDM5AP29375 1690 aaKnown RBP24.48■■□□□ 1.51
COMMD4-224ENST00000568877 TMEM131LA2VDJ0 1609 aa24.47■■□□□ 1.51
COMMD4-224ENST00000568877 TMEM2Q9UHN6 1383 aa24.42■■□□□ 1.5
COMMD4-224ENST00000568877 KIF1BO60333 1816 aa24.41■■□□□ 1.5
COMMD4-224ENST00000568877 ZNF326Q5BKZ1 582 aaKnown RBP24.41■■□□□ 1.5
COMMD4-224ENST00000568877 SLIT1O75093 1534 aa24.4■■□□□ 1.5
COMMD4-224ENST00000568877 ARHGAP23Q9P227 1491 aa24.4■■□□□ 1.5
COMMD4-224ENST00000568877 SPATA31E1Q6ZUB1 1445 aa24.4■■□□□ 1.5
COMMD4-224ENST00000568877 ANKLE2Q86XL3 938 aa24.39■■□□□ 1.49
COMMD4-224ENST00000568877 SIN3AQ96ST3 1273 aa24.38■■□□□ 1.49
COMMD4-224ENST00000568877 MYO5BQ9ULV0 1848 aa24.38■■□□□ 1.49
COMMD4-224ENST00000568877 HDGFP51858 240 aaKnown RBP24.37■■□□□ 1.49
COMMD4-224ENST00000568877 RGL3Q3MIN7 710 aa24.37■■□□□ 1.49
COMMD4-224ENST00000568877 TXNDC2Q86VQ3 553 aa24.37■■□□□ 1.49
COMMD4-224ENST00000568877 EID1Q9Y6B2 187 aa24.37■■□□□ 1.49
COMMD4-224ENST00000568877 NEURL4Q96JN8 1562 aa24.37■■□□□ 1.49
COMMD4-224ENST00000568877 NCKAP5LQ9HCH0 1330 aa24.36■■□□□ 1.49
COMMD4-224ENST00000568877 RIMS2Q9UQ26 1411 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms