RNA–Protein interactions for RNA: ENST00000568848.5

USB1-214, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-214ENST00000568848 DHX29Q7Z478 1369 aaKnown RBP24.01■■□□□ 1.43
USB1-214ENST00000568848 CAMSAP2Q08AD1 1489 aa24■■□□□ 1.43
USB1-214ENST00000568848 PIP4K2BP78356 416 aa23.99■■□□□ 1.43
USB1-214ENST00000568848 TNRQ92752 1358 aa23.99■■□□□ 1.43
USB1-214ENST00000568848 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
USB1-214ENST00000568848 POLR1AO95602 1720 aaPredicted RBP23.98■■□□□ 1.43
USB1-214ENST00000568848 NCOA2Q15596 1464 aa23.97■■□□□ 1.43
USB1-214ENST00000568848 CCDC141Q6ZP82 1450 aa23.96■■□□□ 1.43
USB1-214ENST00000568848 HSPA1LP34931 641 aa23.96■■□□□ 1.43
USB1-214ENST00000568848 RTEL1-TNFRSF6BF6WH68 1400 aa23.95■■□□□ 1.42
USB1-214ENST00000568848 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.95■■□□□ 1.42
USB1-214ENST00000568848 KDM5DQ9BY66 1539 aa23.94■■□□□ 1.42
USB1-214ENST00000568848 SENP3Q9H4L4 574 aaPredicted RBP23.94■■□□□ 1.42
USB1-214ENST00000568848 PZPP20742 1482 aa23.93■■□□□ 1.42
USB1-214ENST00000568848 WASHC2CQ9Y4E1 1318 aa23.9■■□□□ 1.42
USB1-214ENST00000568848 SHANK2Q9UPX8 1470 aa23.89■■□□□ 1.42
USB1-214ENST00000568848 VWDEQ8N2E2 1590 aa23.89■■□□□ 1.41
USB1-214ENST00000568848 ALKQ9UM73 1620 aa23.88■■□□□ 1.41
USB1-214ENST00000568848 MED1Q15648 1581 aaPredicted RBP23.87■■□□□ 1.41
USB1-214ENST00000568848 STRCP1A6NGW2 1772 aa23.85■■□□□ 1.41
USB1-214ENST00000568848 MIA2Q96PC5 1412 aa23.84■■□□□ 1.41
USB1-214ENST00000568848 UGGT1Q9NYU2 1555 aa23.84■■□□□ 1.41
USB1-214ENST00000568848 CPS1P31327 1500 aa23.83■■□□□ 1.41
USB1-214ENST00000568848 NPHP4O75161 1426 aaPredicted RBP23.83■■□□□ 1.4
USB1-214ENST00000568848 ANKLE2Q86XL3 938 aa23.82■■□□□ 1.4
USB1-214ENST00000568848 ARHGEF5Q12774 1597 aa23.82■■□□□ 1.4
USB1-214ENST00000568848 CFAP65Q6ZU64 1925 aaKnown RBP23.81■■□□□ 1.4
USB1-214ENST00000568848 ABCC3O15438 1527 aa23.8■■□□□ 1.4
USB1-214ENST00000568848 IQGAP1P46940 1657 aa23.79■■□□□ 1.4
USB1-214ENST00000568848 CEP152O94986 1710 aa23.79■■□□□ 1.4
USB1-214ENST00000568848 MROH1Q8NDA8 1641 aa23.78■■□□□ 1.4
USB1-214ENST00000568848 RNF17Q9BXT8 1623 aaKnown RBP23.77■■□□□ 1.4
USB1-214ENST00000568848 NLRP1Q9C000 1473 aa23.77■■□□□ 1.4
USB1-214ENST00000568848 TOM1O60784 492 aa23.77■■□□□ 1.4
USB1-214ENST00000568848 KANK4Q5T7N3 995 aaPredicted RBP23.77■■□□□ 1.4
USB1-214ENST00000568848 FAM135AQ9P2D6 1515 aa23.77■■□□□ 1.4
USB1-214ENST00000568848 LOC105371045A0A1W2PR82 267 aa23.76■■□□□ 1.39
USB1-214ENST00000568848 THEMISQ8N1K5 641 aaPredicted RBP23.76■■□□□ 1.39
USB1-214ENST00000568848 DEPDC5O75140 1603 aa23.75■■□□□ 1.39
USB1-214ENST00000568848 TSPY4P0CV99 314 aa23.75■■□□□ 1.39
USB1-214ENST00000568848 TSPY10P0CW01 314 aa23.75■■□□□ 1.39
USB1-214ENST00000568848 ERVK-7P63135 1459 aa23.75■■□□□ 1.39
USB1-214ENST00000568848 LRRC9Q6ZRR7 1453 aa23.75■■□□□ 1.39
USB1-214ENST00000568848 MED14O60244 1454 aa23.74■■□□□ 1.39
USB1-214ENST00000568848 LRRC7Q96NW7 1537 aa23.71■■□□□ 1.39
USB1-214ENST00000568848 MAST1Q9Y2H9 1570 aa23.7■■□□□ 1.38
USB1-214ENST00000568848 RSPH4AQ5TD94 716 aa23.7■■□□□ 1.38
USB1-214ENST00000568848 ZC3H13Q5T200 1668 aaKnown RBP23.7■■□□□ 1.38
USB1-214ENST00000568848 UBR1Q8IWV7 1749 aa23.69■■□□□ 1.38
USB1-214ENST00000568848 VPS8Q8N3P4 1428 aa23.67■■□□□ 1.38
USB1-214ENST00000568848 LTKP29376 864 aa23.65■■□□□ 1.38
USB1-214ENST00000568848 EIF2AK4Q9P2K8 1649 aaKnown RBP23.65■■□□□ 1.38
USB1-214ENST00000568848 PHF23Q9BUL5 403 aaPredicted RBP23.64■■□□□ 1.37
USB1-214ENST00000568848 XIRP1Q702N8 1843 aaKnown RBP23.61■■□□□ 1.37
USB1-214ENST00000568848 MYOM3Q5VTT5 1437 aa23.61■■□□□ 1.37
USB1-214ENST00000568848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.61■■□□□ 1.37
USB1-214ENST00000568848 SCAF11Q99590 1463 aaKnown RBP23.61■■□□□ 1.37
USB1-214ENST00000568848 RRP7BPQ9NSQ0 103 aa23.6■■□□□ 1.37
USB1-214ENST00000568848 SYNMO15061 1565 aa23.6■■□□□ 1.37
USB1-214ENST00000568848 PIK3C2BO00750 1634 aa23.58■■□□□ 1.36
USB1-214ENST00000568848 DUOX2Q9NRD8 1548 aa23.58■■□□□ 1.36
USB1-214ENST00000568848 KIF15Q9NS87 1388 aa23.57■■□□□ 1.36
USB1-214ENST00000568848 TXNDC2Q86VQ3 553 aa23.57■■□□□ 1.36
USB1-214ENST00000568848 RBM33Q96EV2 1170 aaKnown RBP23.57■■□□□ 1.36
USB1-214ENST00000568848 CROCC2H7BZ55 1655 aa23.56■■□□□ 1.36
USB1-214ENST00000568848 ABCC5O15440 1437 aa23.56■■□□□ 1.36
USB1-214ENST00000568848 ARHGAP23Q9P227 1491 aa23.56■■□□□ 1.36
USB1-214ENST00000568848 PRDM15P57071 1507 aaPredicted RBP23.55■■□□□ 1.36
USB1-214ENST00000568848 RGS17Q9UGC6 210 aaPredicted RBP23.53■■□□□ 1.36
USB1-214ENST00000568848 SLIT1O75093 1534 aa23.53■■□□□ 1.36
USB1-214ENST00000568848 PTPN23Q9H3S7 1636 aa23.51■■□□□ 1.35
USB1-214ENST00000568848 CHIC2Q9UKJ5 165 aa23.51■■□□□ 1.35
USB1-214ENST00000568848 DAPK1P53355 1430 aa23.47■■□□□ 1.35
USB1-214ENST00000568848 MAP3K1Q13233 1512 aa23.47■■□□□ 1.35
USB1-214ENST00000568848 ARHGAP31Q2M1Z3 1444 aa23.46■■□□□ 1.35
USB1-214ENST00000568848 SLC26A8Q96RN1 970 aa23.46■■□□□ 1.35
USB1-214ENST00000568848 ERBINQ96RT1 1412 aa23.46■■□□□ 1.35
USB1-214ENST00000568848 TMEM2Q9UHN6 1383 aa23.45■■□□□ 1.34
USB1-214ENST00000568848 TMEM94Q12767 1356 aa23.44■■□□□ 1.34
USB1-214ENST00000568848 IDI1Q13907 227 aa23.44■■□□□ 1.34
USB1-214ENST00000568848 STAG3Q9UJ98 1225 aa23.44■■□□□ 1.34
USB1-214ENST00000568848 EID1Q9Y6B2 187 aa23.43■■□□□ 1.34
USB1-214ENST00000568848 EFCAB6Q5THR3 1501 aa23.42■■□□□ 1.34
USB1-214ENST00000568848 FGD6Q6ZV73 1430 aa23.39■■□□□ 1.33
USB1-214ENST00000568848 ROBO1Q9Y6N7 1651 aa23.38■■□□□ 1.33
USB1-214ENST00000568848 POTEAQ6S8J7 498 aa23.37■■□□□ 1.33
USB1-214ENST00000568848 TET3O43151 1660 aa23.37■■□□□ 1.33
USB1-214ENST00000568848 KANK1Q14678 1352 aa23.36■■□□□ 1.33
USB1-214ENST00000568848 PROSER2Q86WR7 435 aaPredicted RBP23.35■■□□□ 1.33
USB1-214ENST00000568848 MYO5BQ9ULV0 1848 aa23.35■■□□□ 1.33
USB1-214ENST00000568848 ADGRB3O60242 1522 aa23.34■■□□□ 1.33
USB1-214ENST00000568848 LMTK2Q8IWU2 1503 aa23.33■■□□□ 1.33
USB1-214ENST00000568848 KCNA6P17658 529 aa23.33■■□□□ 1.33
USB1-214ENST00000568848 NOS1P29475 1434 aa23.33■■□□□ 1.32
USB1-214ENST00000568848 FAM135BQ49AJ0 1406 aa23.33■■□□□ 1.32
USB1-214ENST00000568848 BCANQ96GW7 911 aa23.32■■□□□ 1.32
USB1-214ENST00000568848 SETD1AO15047 1707 aaKnown RBP23.31■■□□□ 1.32
USB1-214ENST00000568848 ANKRD30AQ9BXX3 1397 aa23.31■■□□□ 1.32
USB1-214ENST00000568848 NWD1Q149M9 1564 aa23.29■■□□□ 1.32
USB1-214ENST00000568848 KDM5AP29375 1690 aaKnown RBP23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms