RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 GPATCH8Q9UKJ3 1502 aaKnown RBP19.46■□□□□ 0.71
CLK3-222ENST00000568232 CASKIN1Q8WXD9 1431 aa19.45■□□□□ 0.7
CLK3-222ENST00000568232 INO80Q9ULG1 1556 aaPredicted RBP19.44■□□□□ 0.7
CLK3-222ENST00000568232 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLK3-222ENST00000568232 VWDEQ8N2E2 1590 aa19.41■□□□□ 0.7
CLK3-222ENST00000568232 CFDP1Q9UEE9 299 aaPredicted RBP19.41■□□□□ 0.7
CLK3-222ENST00000568232 RGS17Q9UGC6 210 aaPredicted RBP19.41■□□□□ 0.7
CLK3-222ENST00000568232 KIAA1107Q9UPP5 1409 aa19.41■□□□□ 0.7
CLK3-222ENST00000568232 POLR1AO95602 1720 aaPredicted RBP19.4■□□□□ 0.7
CLK3-222ENST00000568232 ANKLE2Q86XL3 938 aa19.4■□□□□ 0.7
CLK3-222ENST00000568232 TNRQ92752 1358 aa19.4■□□□□ 0.7
CLK3-222ENST00000568232 ZNF644Q9H582 1327 aaPredicted RBP19.36■□□□□ 0.69
CLK3-222ENST00000568232 PLEKHH2Q8IVE3 1493 aa19.35■□□□□ 0.69
CLK3-222ENST00000568232 NPHP4O75161 1426 aaPredicted RBP19.35■□□□□ 0.69
CLK3-222ENST00000568232 THEMISQ8N1K5 641 aaPredicted RBP19.34■□□□□ 0.69
CLK3-222ENST00000568232 ADGBQ8N7X0 1667 aa19.33■□□□□ 0.69
CLK3-222ENST00000568232 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.69
CLK3-222ENST00000568232 KIF3BO15066 747 aa19.32■□□□□ 0.68
CLK3-222ENST00000568232 DHX29Q7Z478 1369 aaKnown RBP19.32■□□□□ 0.68
CLK3-222ENST00000568232 LRRC7Q96NW7 1537 aa19.31■□□□□ 0.68
CLK3-222ENST00000568232 MED14O60244 1454 aa19.31■□□□□ 0.68
CLK3-222ENST00000568232 PZPP20742 1482 aa19.31■□□□□ 0.68
CLK3-222ENST00000568232 FYCO1Q9BQS8 1478 aa19.3■□□□□ 0.68
CLK3-222ENST00000568232 MIA2Q96PC5 1412 aa19.3■□□□□ 0.68
CLK3-222ENST00000568232 WASHC2CQ9Y4E1 1318 aa19.29■□□□□ 0.68
CLK3-222ENST00000568232 UGGT1Q9NYU2 1555 aa19.29■□□□□ 0.68
CLK3-222ENST00000568232 STRCP1A6NGW2 1772 aa19.29■□□□□ 0.68
CLK3-222ENST00000568232 MBD5Q9P267 1494 aa19.28■□□□□ 0.68
CLK3-222ENST00000568232 POTEAQ6S8J7 498 aa19.27■□□□□ 0.68
CLK3-222ENST00000568232 KDM5DQ9BY66 1539 aa19.26■□□□□ 0.67
CLK3-222ENST00000568232 FAM135AQ9P2D6 1515 aa19.26■□□□□ 0.67
CLK3-222ENST00000568232 DEPDC5O75140 1603 aa19.26■□□□□ 0.67
CLK3-222ENST00000568232 IQGAP1P46940 1657 aa19.25■□□□□ 0.67
CLK3-222ENST00000568232 NLRP1Q9C000 1473 aa19.25■□□□□ 0.67
CLK3-222ENST00000568232 RNF17Q9BXT8 1623 aaKnown RBP19.25■□□□□ 0.67
CLK3-222ENST00000568232 RTEL1-TNFRSF6BF6WH68 1400 aa19.25■□□□□ 0.67
CLK3-222ENST00000568232 MTUS2Q5JR59 1369 aa19.21■□□□□ 0.67
CLK3-222ENST00000568232 SYNMO15061 1565 aa19.19■□□□□ 0.66
CLK3-222ENST00000568232 TIAM1Q13009 1591 aa19.19■□□□□ 0.66
CLK3-222ENST00000568232 PPP4R3CPQ6ZMV5 832 aa19.14■□□□□ 0.65
CLK3-222ENST00000568232 ZC3H13Q5T200 1668 aaKnown RBP19.14■□□□□ 0.65
CLK3-222ENST00000568232 LTKP29376 864 aa19.13■□□□□ 0.65
CLK3-222ENST00000568232 CCDC141Q6ZP82 1450 aa19.13■□□□□ 0.65
CLK3-222ENST00000568232 FAM135BQ49AJ0 1406 aa19.11■□□□□ 0.65
CLK3-222ENST00000568232 TXNDC2Q86VQ3 553 aa19.1■□□□□ 0.65
CLK3-222ENST00000568232 SCAF11Q99590 1463 aaKnown RBP19.09■□□□□ 0.65
CLK3-222ENST00000568232 XIRP1Q702N8 1843 aaKnown RBP19.09■□□□□ 0.65
CLK3-222ENST00000568232 ERVK-7P63135 1459 aa19.09■□□□□ 0.65
CLK3-222ENST00000568232 SETD1AO15047 1707 aaKnown RBP19.08■□□□□ 0.65
CLK3-222ENST00000568232 ABCC3O15438 1527 aa19.08■□□□□ 0.64
CLK3-222ENST00000568232 CAMSAP2Q08AD1 1489 aa19.07■□□□□ 0.64
CLK3-222ENST00000568232 NCOA2Q15596 1464 aa19.07■□□□□ 0.64
CLK3-222ENST00000568232 RSPH4AQ5TD94 716 aa19.06■□□□□ 0.64
CLK3-222ENST00000568232 RBM33Q96EV2 1170 aaKnown RBP19.06■□□□□ 0.64
CLK3-222ENST00000568232 CEP162Q5TB80 1403 aa19.06■□□□□ 0.64
CLK3-222ENST00000568232 UBR1Q8IWV7 1749 aa19.05■□□□□ 0.64
CLK3-222ENST00000568232 EHBP1L1Q8N3D4 1523 aa19.05■□□□□ 0.64
CLK3-222ENST00000568232 TSPY4P0CV99 314 aa19.04■□□□□ 0.64
CLK3-222ENST00000568232 TSPY10P0CW01 314 aa19.04■□□□□ 0.64
CLK3-222ENST00000568232 TMEM94Q12767 1356 aa19.04■□□□□ 0.64
CLK3-222ENST00000568232 ARHGAP23Q9P227 1491 aa19.03■□□□□ 0.64
CLK3-222ENST00000568232 ROBO1Q9Y6N7 1651 aa19.01■□□□□ 0.63
CLK3-222ENST00000568232 SLIT1O75093 1534 aa19■□□□□ 0.63
CLK3-222ENST00000568232 EID1Q9Y6B2 187 aa19■□□□□ 0.63
CLK3-222ENST00000568232 UPF1Q92900 1129 aaKnown RBP eCLIP18.99■□□□□ 0.63
CLK3-222ENST00000568232 PROSER2Q86WR7 435 aaPredicted RBP18.98■□□□□ 0.63
CLK3-222ENST00000568232 MROH1Q8NDA8 1641 aa18.97■□□□□ 0.63
CLK3-222ENST00000568232 ARHGEF5Q12774 1597 aa18.97■□□□□ 0.63
CLK3-222ENST00000568232 CFAP65Q6ZU64 1925 aaKnown RBP18.96■□□□□ 0.63
CLK3-222ENST00000568232 MAP3K1Q13233 1512 aa18.96■□□□□ 0.63
CLK3-222ENST00000568232 KCNA6P17658 529 aa18.96■□□□□ 0.63
CLK3-222ENST00000568232 SLC26A8Q96RN1 970 aa18.96■□□□□ 0.63
CLK3-222ENST00000568232 CEP152O94986 1710 aa18.95■□□□□ 0.62
CLK3-222ENST00000568232 TMEM2Q9UHN6 1383 aa18.94■□□□□ 0.62
CLK3-222ENST00000568232 TRIM52Q96A61 297 aa18.94■□□□□ 0.62
CLK3-222ENST00000568232 JCADQ9P266 1359 aa18.93■□□□□ 0.62
CLK3-222ENST00000568232 SLAIN2Q9P270 581 aa18.92■□□□□ 0.62
CLK3-222ENST00000568232 STAG3Q9UJ98 1225 aa18.92■□□□□ 0.62
CLK3-222ENST00000568232 SRCAPQ6ZRS2 3230 aa18.91■□□□□ 0.62
CLK3-222ENST00000568232 PIK3C2BO00750 1634 aa18.9■□□□□ 0.62
CLK3-222ENST00000568232 EIF2AK4Q9P2K8 1649 aaKnown RBP18.9■□□□□ 0.62
CLK3-222ENST00000568232 LRRC9Q6ZRR7 1453 aa18.9■□□□□ 0.62
CLK3-222ENST00000568232 PHLPP1O60346 1717 aa18.89■□□□□ 0.61
CLK3-222ENST00000568232 PRDM15P57071 1507 aaPredicted RBP18.89■□□□□ 0.61
CLK3-222ENST00000568232 MAST1Q9Y2H9 1570 aa18.89■□□□□ 0.61
CLK3-222ENST00000568232 LRP6O75581 1613 aa18.89■□□□□ 0.61
CLK3-222ENST00000568232 ARHGAP31Q2M1Z3 1444 aa18.88■□□□□ 0.61
CLK3-222ENST00000568232 TET3O43151 1660 aa18.87■□□□□ 0.61
CLK3-222ENST00000568232 MSH6P52701 1360 aa18.87■□□□□ 0.61
CLK3-222ENST00000568232 IDI1Q13907 227 aa18.87■□□□□ 0.61
CLK3-222ENST00000568232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.87■□□□□ 0.61
CLK3-222ENST00000568232 MEX3CQ5U5Q3 659 aaKnown RBP18.86■□□□□ 0.61
CLK3-222ENST00000568232 ZNF772Q68DY9 489 aaPredicted RBP18.85■□□□□ 0.61
CLK3-222ENST00000568232 EFCAB6Q5THR3 1501 aa18.84■□□□□ 0.61
CLK3-222ENST00000568232 COL16A1Q07092 1604 aaPredicted RBP18.83■□□□□ 0.61
CLK3-222ENST00000568232 BCANQ96GW7 911 aa18.83■□□□□ 0.6
CLK3-222ENST00000568232 NKTRP30414 1462 aaKnown RBP18.83■□□□□ 0.6
CLK3-222ENST00000568232 DUOX2Q9NRD8 1548 aa18.82■□□□□ 0.6
CLK3-222ENST00000568232 SPATA31A6Q5VVP1 1343 aa18.81■□□□□ 0.6
CLK3-222ENST00000568232 RXRBP28702 533 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms