RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 DEPDC5O75140 1603 aa18.91■□□□□ 0.62
SF3B3-206ENST00000565990 ADAMTSL3P82987 1691 aa18.89■□□□□ 0.61
SF3B3-206ENST00000565990 GGT6Q6P531 493 aa18.89■□□□□ 0.61
SF3B3-206ENST00000565990 ACIN1Q9UKV3 1341 aaKnown RBP18.88■□□□□ 0.61
SF3B3-206ENST00000565990 MROH1Q8NDA8 1641 aa18.88■□□□□ 0.61
SF3B3-206ENST00000565990 MLECQ14165 292 aa18.86■□□□□ 0.61
SF3B3-206ENST00000565990 UNC13BO14795 1591 aa18.85■□□□□ 0.61
SF3B3-206ENST00000565990 VWDEQ8N2E2 1590 aa18.85■□□□□ 0.61
SF3B3-206ENST00000565990 PRDM15P57071 1507 aaPredicted RBP18.84■□□□□ 0.61
SF3B3-206ENST00000565990 KDM4FA0A1W2PPD8 638 aa18.84■□□□□ 0.61
SF3B3-206ENST00000565990 KDM5DQ9BY66 1539 aa18.84■□□□□ 0.61
SF3B3-206ENST00000565990 FAM135AQ9P2D6 1515 aa18.84■□□□□ 0.61
SF3B3-206ENST00000565990 RAB3GAP2Q9H2M9 1393 aa18.83■□□□□ 0.61
SF3B3-206ENST00000565990 WASHC2CQ9Y4E1 1318 aa18.81■□□□□ 0.6
SF3B3-206ENST00000565990 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.81■□□□□ 0.63e-10■□□□□ 10.6
SF3B3-206ENST00000565990 PCGF6Q9BYE7 350 aa18.81■□□□□ 0.6
SF3B3-206ENST00000565990 FER1L4A9Z1Z3 1794 aa18.8■□□□□ 0.6
SF3B3-206ENST00000565990 CNTLNQ9NXG0 1405 aa18.79■□□□□ 0.6
SF3B3-206ENST00000565990 NUP155O75694 1391 aa18.79■□□□□ 0.6
SF3B3-206ENST00000565990 KANK1Q14678 1352 aa18.79■□□□□ 0.6
SF3B3-206ENST00000565990 LMTK2Q8IWU2 1503 aa18.79■□□□□ 0.6
SF3B3-206ENST00000565990 ZC3H13Q5T200 1668 aaKnown RBP18.79■□□□□ 0.6
SF3B3-206ENST00000565990 MADDQ8WXG6 1647 aa18.78■□□□□ 0.6
SF3B3-206ENST00000565990 MROH2AA6NES4 1674 aa18.78■□□□□ 0.6
SF3B3-206ENST00000565990 CLTCQ00610 1675 aaKnown RBP18.78■□□□□ 0.6
SF3B3-206ENST00000565990 ABCC3O15438 1527 aa18.78■□□□□ 0.6
SF3B3-206ENST00000565990 IQGAP3Q86VI3 1631 aa18.78■□□□□ 0.6
SF3B3-206ENST00000565990 ZMYM3Q14202 1370 aa18.77■□□□□ 0.6
SF3B3-206ENST00000565990 CEP152O94986 1710 aa18.77■□□□□ 0.59
SF3B3-206ENST00000565990 ESF1Q9H501 851 aaKnown RBP18.76■□□□□ 0.59
SF3B3-206ENST00000565990 ARHGAP31Q2M1Z3 1444 aa18.74■□□□□ 0.59
SF3B3-206ENST00000565990 RIMS1Q86UR5 1692 aaKnown RBP18.74■□□□□ 0.59
SF3B3-206ENST00000565990 TRIM52Q96A61 297 aa18.74■□□□□ 0.59
SF3B3-206ENST00000565990 TET3O43151 1660 aa18.73■□□□□ 0.59
SF3B3-206ENST00000565990 PZPP20742 1482 aa18.72■□□□□ 0.59
SF3B3-206ENST00000565990 CAMSAP1Q5T5Y3 1602 aa18.72■□□□□ 0.59
SF3B3-206ENST00000565990 MPHOSPH9Q99550 1183 aa18.72■□□□□ 0.59
SF3B3-206ENST00000565990 PTPRMP28827 1452 aa18.71■□□□□ 0.59
SF3B3-206ENST00000565990 C3P01024 1663 aa18.71■□□□□ 0.59
SF3B3-206ENST00000565990 CFAP65Q6ZU64 1925 aaKnown RBP18.7■□□□□ 0.58
SF3B3-206ENST00000565990 SETD1BQ9UPS6 1966 aaKnown RBP18.69■□□□□ 0.58
SF3B3-206ENST00000565990 EFCAB6Q5THR3 1501 aa18.69■□□□□ 0.58
SF3B3-206ENST00000565990 CEBPAP49715 358 aaPredicted RBP18.68■□□□□ 0.58
SF3B3-206ENST00000565990 SLC4A1APQ9BWU0 796 aaKnown RBP18.68■□□□□ 0.58
SF3B3-206ENST00000565990 RPRD2Q5VT52 1461 aaKnown RBP18.68■□□□□ 0.58
SF3B3-206ENST00000565990 E9PCH4 1651 aa18.68■□□□□ 0.58
SF3B3-206ENST00000565990 NPATQ14207 1427 aa18.67■□□□□ 0.58
SF3B3-206ENST00000565990 FBXO31Q5XUX0 539 aaPredicted RBP18.65■□□□□ 0.58
SF3B3-206ENST00000565990 PKD2Q13563 968 aa18.64■□□□□ 0.57
SF3B3-206ENST00000565990 PREX1Q8TCU6 1659 aa18.63■□□□□ 0.57
SF3B3-206ENST00000565990 PTPRTO14522 1441 aa18.62■□□□□ 0.57
SF3B3-206ENST00000565990 NOS1P29475 1434 aa18.62■□□□□ 0.57
SF3B3-206ENST00000565990 SPATA31D1Q6ZQQ2 1576 aa18.62■□□□□ 0.57
SF3B3-206ENST00000565990 ERVK-7P63135 1459 aa18.59■□□□□ 0.57
SF3B3-206ENST00000565990 ZEB1P37275 1124 aaPredicted RBP18.58■□□□□ 0.56
SF3B3-206ENST00000565990 PLA2R1Q13018 1463 aa18.58■□□□□ 0.56
SF3B3-206ENST00000565990 FOXD1Q16676 465 aa18.57■□□□□ 0.56
SF3B3-206ENST00000565990 SPHKAPQ2M3C7 1700 aa18.57■□□□□ 0.56
SF3B3-206ENST00000565990 DHX57Q6P158 1386 aaKnown RBP18.56■□□□□ 0.56
SF3B3-206ENST00000565990 SLC52A1Q9NWF4 448 aa18.56■□□□□ 0.56
SF3B3-206ENST00000565990 PLPPR3Q6T4P5 718 aa18.55■□□□□ 0.56
SF3B3-206ENST00000565990 SYNMO15061 1565 aa18.55■□□□□ 0.56
SF3B3-206ENST00000565990 TNRQ92752 1358 aa18.55■□□□□ 0.56
SF3B3-206ENST00000565990 IDI1Q13907 227 aa18.54■□□□□ 0.56
SF3B3-206ENST00000565990 ANKRD30BQ9BXX2 1392 aa18.54■□□□□ 0.56
SF3B3-206ENST00000565990 PIK3C2BO00750 1634 aa18.53■□□□□ 0.56
SF3B3-206ENST00000565990 TRPM2O94759 1503 aa18.52■□□□□ 0.56
SF3B3-206ENST00000565990 NLRP1Q9C000 1473 aa18.52■□□□□ 0.55
SF3B3-206ENST00000565990 MYO3AQ8NEV4 1616 aa18.49■□□□□ 0.55
SF3B3-206ENST00000565990 KDM5AP29375 1690 aaKnown RBP18.48■□□□□ 0.55
SF3B3-206ENST00000565990 A2ML1A8K2U0 1454 aa18.47■□□□□ 0.55
SF3B3-206ENST00000565990 CLTCL1P53675 1640 aa18.46■□□□□ 0.55
SF3B3-206ENST00000565990 ZNF142P52746 1687 aaPredicted RBP18.46■□□□□ 0.55
SF3B3-206ENST00000565990 UGGT1Q9NYU2 1555 aa18.46■□□□□ 0.55
SF3B3-206ENST00000565990 KIF1BO60333 1816 aa18.45■□□□□ 0.54
SF3B3-206ENST00000565990 UHRF1BP1Q6BDS2 1440 aa18.45■□□□□ 0.54
SF3B3-206ENST00000565990 UBR1Q8IWV7 1749 aa18.44■□□□□ 0.54
SF3B3-206ENST00000565990 TMEM131LA2VDJ0 1609 aa18.44■□□□□ 0.54
SF3B3-206ENST00000565990 CEP170BQ9Y4F5 1589 aaPredicted RBP18.43■□□□□ 0.54
SF3B3-206ENST00000565990 CCDC144AA2RUR9 1427 aa18.43■□□□□ 0.54
SF3B3-206ENST00000565990 MYO5BQ9ULV0 1848 aa18.42■□□□□ 0.54
SF3B3-206ENST00000565990 LMTK3Q96Q04 1460 aa18.42■□□□□ 0.54
SF3B3-206ENST00000565990 THEMISQ8N1K5 641 aaPredicted RBP18.42■□□□□ 0.54
SF3B3-206ENST00000565990 CLSPNQ9HAW4 1339 aa18.42■□□□□ 0.54
SF3B3-206ENST00000565990 NEURL4Q96JN8 1562 aa18.42■□□□□ 0.54
SF3B3-206ENST00000565990 SPATA31E1Q6ZUB1 1445 aa18.4■□□□□ 0.54
SF3B3-206ENST00000565990 ADGRB3O60242 1522 aa18.39■□□□□ 0.53
SF3B3-206ENST00000565990 SIN3AQ96ST3 1273 aa18.38■□□□□ 0.53
SF3B3-206ENST00000565990 STAG3Q9UJ98 1225 aa18.37■□□□□ 0.53
SF3B3-206ENST00000565990 SLIT1O75093 1534 aa18.35■□□□□ 0.53
SF3B3-206ENST00000565990 ARHGAP23Q9P227 1491 aa18.35■□□□□ 0.53
SF3B3-206ENST00000565990 TMEM2Q9UHN6 1383 aa18.35■□□□□ 0.53
SF3B3-206ENST00000565990 RPGRIP1LQ68CZ1 1315 aa18.35■□□□□ 0.53
SF3B3-206ENST00000565990 CHGAP10645 457 aaKnown RBP18.35■□□□□ 0.53
SF3B3-206ENST00000565990 CCER1Q8TC90 406 aaPredicted RBP18.35■□□□□ 0.53
SF3B3-206ENST00000565990 HDGFP51858 240 aaKnown RBP18.33■□□□□ 0.52
SF3B3-206ENST00000565990 HSPA2P54652 639 aa18.32■□□□□ 0.52
SF3B3-206ENST00000565990 ZFYVE9O95405 1425 aa18.32■□□□□ 0.52
SF3B3-206ENST00000565990 RGL3Q3MIN7 710 aa18.31■□□□□ 0.52
SF3B3-206ENST00000565990 STRCQ7RTU9 1775 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms